miRNA display CGI


Results 81 - 100 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24729 3' -52.1 NC_005264.1 + 81796 0.68 0.954376
Target:  5'- -cCACGCGC-CaGUGAgGGUAGACGGCGg -3'
miRNA:   3'- acGUGCGCGcG-CGCU-UUAUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 120781 0.68 0.954376
Target:  5'- cGcCACGCGC-CGCGGgcaacgcgauugGAUAGGCcGCGu -3'
miRNA:   3'- aC-GUGCGCGcGCGCU------------UUAUCUGuUGC- -5'
24729 3' -52.1 NC_005264.1 + 12969 0.68 0.954376
Target:  5'- gGCGCGCGC-CGCcGAc---GACGACGc -3'
miRNA:   3'- aCGUGCGCGcGCG-CUuuauCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 26792 0.68 0.953571
Target:  5'- cUGCACGCGgGCuuccacgaggaGAAGUGGGCcGCGc -3'
miRNA:   3'- -ACGUGCGCgCGcg---------CUUUAUCUGuUGC- -5'
24729 3' -52.1 NC_005264.1 + 129594 0.68 0.951931
Target:  5'- cUGCAgGCGCugcgGCGCGGcggcgaagcuucucgAGUAGACGcCGa -3'
miRNA:   3'- -ACGUgCGCG----CGCGCU---------------UUAUCUGUuGC- -5'
24729 3' -52.1 NC_005264.1 + 154135 0.68 0.950253
Target:  5'- gGcCACGCGCGCGCaGAGcgAGuucuuCAAgGg -3'
miRNA:   3'- aC-GUGCGCGCGCG-CUUuaUCu----GUUgC- -5'
24729 3' -52.1 NC_005264.1 + 143075 0.68 0.950253
Target:  5'- aGCAUGCGUgucacaaucgcgGCGCGAugcuggGGGCAcgGCGa -3'
miRNA:   3'- aCGUGCGCG------------CGCGCUuua---UCUGU--UGC- -5'
24729 3' -52.1 NC_005264.1 + 96892 0.68 0.961915
Target:  5'- gGCAUgGCgGCGCGCGAGGgc-GCGGCa -3'
miRNA:   3'- aCGUG-CG-CGCGCGCUUUaucUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 44530 0.68 0.96534
Target:  5'- cGCuACGaCGCGCGCGAGuacaucaccgAGACGucaaACGc -3'
miRNA:   3'- aCG-UGC-GCGCGCGCUUua--------UCUGU----UGC- -5'
24729 3' -52.1 NC_005264.1 + 95975 0.67 0.97688
Target:  5'- cUGCucuC-CGCGCGCGAucuAUuuucgcgucGGGCGACGg -3'
miRNA:   3'- -ACGu--GcGCGCGCGCUu--UA---------UCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 136653 0.67 0.97688
Target:  5'- aGCcuCGaCGCGCGUGGAGUAaaACAAUGg -3'
miRNA:   3'- aCGu-GC-GCGCGCGCUUUAUc-UGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 53613 0.67 0.97688
Target:  5'- aGgACGCGCgGUGgGAGAUGGGaGACa -3'
miRNA:   3'- aCgUGCGCG-CGCgCUUUAUCUgUUGc -5'
24729 3' -52.1 NC_005264.1 + 138336 0.67 0.976631
Target:  5'- --gGCGCGUGCGCGAca-AGGCGcccgaacGCGa -3'
miRNA:   3'- acgUGCGCGCGCGCUuuaUCUGU-------UGC- -5'
24729 3' -52.1 NC_005264.1 + 123100 0.67 0.975359
Target:  5'- cGCACGUGCGCucCGggGgcaucgaguacuacuUGGcCAACGg -3'
miRNA:   3'- aCGUGCGCGCGc-GCuuU---------------AUCuGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 129002 0.67 0.974305
Target:  5'- cUGC-CGCgGCGCGCaggGGAAUAGcuACAGCc -3'
miRNA:   3'- -ACGuGCG-CGCGCG---CUUUAUC--UGUUGc -5'
24729 3' -52.1 NC_005264.1 + 79399 0.67 0.974305
Target:  5'- cGC-CGCGgGCGUGGcg-AGGCcGCGg -3'
miRNA:   3'- aCGuGCGCgCGCGCUuuaUCUGuUGC- -5'
24729 3' -52.1 NC_005264.1 + 40286 0.67 0.971529
Target:  5'- cGC-CGCGuCGCGguucgaCGAGGcGGACGGCGa -3'
miRNA:   3'- aCGuGCGC-GCGC------GCUUUaUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 159540 0.67 0.971529
Target:  5'- gGCGCGCGauccCGCGCGAGcuc-ACGACu -3'
miRNA:   3'- aCGUGCGC----GCGCGCUUuaucUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 52879 0.67 0.971529
Target:  5'- -aCACGCGCGaGCGAG--GGGCuGCGu -3'
miRNA:   3'- acGUGCGCGCgCGCUUuaUCUGuUGC- -5'
24729 3' -52.1 NC_005264.1 + 154961 0.67 0.968542
Target:  5'- cGUACGCGCGC---AGAUGcGCAGCGa -3'
miRNA:   3'- aCGUGCGCGCGcgcUUUAUcUGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.