Results 121 - 140 of 194 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24729 | 3' | -52.1 | NC_005264.1 | + | 48576 | 0.72 | 0.842892 |
Target: 5'- aUGcCACGaCGCGCuucGCGG--UGGACAACGa -3' miRNA: 3'- -AC-GUGC-GCGCG---CGCUuuAUCUGUUGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 36546 | 0.72 | 0.825971 |
Target: 5'- gGC-CGCGCGCcCGAAAgcGGCAugGc -3' miRNA: 3'- aCGuGCGCGCGcGCUUUauCUGUugC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 78958 | 0.74 | 0.71153 |
Target: 5'- gGCAgGUGUGCGCGAAGUucGGCA-CGg -3' miRNA: 3'- aCGUgCGCGCGCGCUUUAu-CUGUuGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 73887 | 0.75 | 0.680673 |
Target: 5'- gUGCuAUGCGCGCGaCGAGAaAGACGuCGa -3' miRNA: 3'- -ACG-UGCGCGCGC-GCUUUaUCUGUuGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 20221 | 0.75 | 0.670292 |
Target: 5'- gGCACGCauguggccccGCGCGUGAcgGGUGGGCAGgGg -3' miRNA: 3'- aCGUGCG----------CGCGCGCU--UUAUCUGUUgC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 45769 | 0.77 | 0.586814 |
Target: 5'- cUGCGCGgGgCGCGCGGAGUGGGgAGuCGa -3' miRNA: 3'- -ACGUGCgC-GCGCGCUUUAUCUgUU-GC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 144992 | 0.77 | 0.576451 |
Target: 5'- cGCGgucgaacaGCGCGCGCGAGAUGGAgGAUc -3' miRNA: 3'- aCGUg-------CGCGCGCGCUUUAUCUgUUGc -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 57500 | 0.77 | 0.576451 |
Target: 5'- aUGCugGCGCGCGCGgcGgcGAgAGCu -3' miRNA: 3'- -ACGugCGCGCGCGCuuUauCUgUUGc -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 121915 | 0.77 | 0.545638 |
Target: 5'- gGCGCgGCGCG-GCGggGaGGGCGACGg -3' miRNA: 3'- aCGUG-CGCGCgCGCuuUaUCUGUUGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 50565 | 0.78 | 0.515373 |
Target: 5'- gGCGCGCGCGUGCGGGA-AGcgcacGCGGCGc -3' miRNA: 3'- aCGUGCGCGCGCGCUUUaUC-----UGUUGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 156688 | 0.74 | 0.71153 |
Target: 5'- gUGCACGCGaUGCGCGAc--GGGCGcGCGg -3' miRNA: 3'- -ACGUGCGC-GCGCGCUuuaUCUGU-UGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 28413 | 0.74 | 0.741751 |
Target: 5'- gGUAUGCGUGuCGCGggGUAGGaccgAACGg -3' miRNA: 3'- aCGUGCGCGC-GCGCuuUAUCUg---UUGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 77001 | 0.72 | 0.820748 |
Target: 5'- gUGCGCGCaagacccgguacugaGCGCGCGcuucuuGGUcacAGACAGCGa -3' miRNA: 3'- -ACGUGCG---------------CGCGCGCu-----UUA---UCUGUUGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 100197 | 0.72 | 0.808314 |
Target: 5'- cGguCGCGUGCuGCGcu-UGGACGGCGg -3' miRNA: 3'- aCguGCGCGCG-CGCuuuAUCUGUUGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 49589 | 0.73 | 0.799231 |
Target: 5'- cGCACGC-CGCcgGCGAccaGGACGACGg -3' miRNA: 3'- aCGUGCGcGCG--CGCUuuaUCUGUUGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 127110 | 0.73 | 0.78999 |
Target: 5'- gGCACGgGCG-GCGuAAAcagGGACAACGa -3' miRNA: 3'- aCGUGCgCGCgCGC-UUUa--UCUGUUGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 149885 | 0.73 | 0.761415 |
Target: 5'- gGCgGCGCGC-CGCccGGUAGGCAACGg -3' miRNA: 3'- aCG-UGCGCGcGCGcuUUAUCUGUUGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 88949 | 0.73 | 0.761415 |
Target: 5'- gGCACGCcUGCuGCGAGAgucGGCGACGg -3' miRNA: 3'- aCGUGCGcGCG-CGCUUUau-CUGUUGC- -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 36820 | 0.74 | 0.751638 |
Target: 5'- cGCAgGCgagGCGCgGCGAAgaucGUAGACAGCa -3' miRNA: 3'- aCGUgCG---CGCG-CGCUU----UAUCUGUUGc -5' |
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24729 | 3' | -52.1 | NC_005264.1 | + | 54203 | 0.74 | 0.741751 |
Target: 5'- gGUACGauuGCGCGgGGGAUacGGACGGCGg -3' miRNA: 3'- aCGUGCg--CGCGCgCUUUA--UCUGUUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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