miRNA display CGI


Results 21 - 40 of 194 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24729 3' -52.1 NC_005264.1 + 25924 0.66 0.986995
Target:  5'- gGgGgGCGCuGUaGCGGAcgAGGCGACGa -3'
miRNA:   3'- aCgUgCGCG-CG-CGCUUuaUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 126754 0.66 0.986995
Target:  5'- aGC-CGCGC-CGaaGAGAgGGACAGCGa -3'
miRNA:   3'- aCGuGCGCGcGCg-CUUUaUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 109618 0.66 0.986995
Target:  5'- aGCAaaugGCGUGgGCGggGggcGCGACGg -3'
miRNA:   3'- aCGUg---CGCGCgCGCuuUaucUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 58633 0.66 0.986995
Target:  5'- gUGCgACGCGUGCucugcgGCGAGGUcGACcACa -3'
miRNA:   3'- -ACG-UGCGCGCG------CGCUUUAuCUGuUGc -5'
24729 3' -52.1 NC_005264.1 + 45682 0.66 0.986995
Target:  5'- aGCACGUG-GCGCGAucccgggGGAaaaCAACa -3'
miRNA:   3'- aCGUGCGCgCGCGCUuua----UCU---GUUGc -5'
24729 3' -52.1 NC_005264.1 + 48707 0.66 0.986995
Target:  5'- cGguCGCuCGCGgGAGAUgAGGCGGCc -3'
miRNA:   3'- aCguGCGcGCGCgCUUUA-UCUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 51999 0.66 0.985311
Target:  5'- cGgACGuCGCGCGCGGA----GCGACc -3'
miRNA:   3'- aCgUGC-GCGCGCGCUUuaucUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 77976 0.66 0.985311
Target:  5'- gGCGC-CGCGCGUaccGGAGcGGGCGAUa -3'
miRNA:   3'- aCGUGcGCGCGCG---CUUUaUCUGUUGc -5'
24729 3' -52.1 NC_005264.1 + 94412 0.66 0.985311
Target:  5'- cGCgGCGCGgacUGCGCGAucgcuGACGugGg -3'
miRNA:   3'- aCG-UGCGC---GCGCGCUuuau-CUGUugC- -5'
24729 3' -52.1 NC_005264.1 + 44273 0.66 0.985311
Target:  5'- cGuCACGC-CGCGCGGAugAGAUcaccgAGCGg -3'
miRNA:   3'- aC-GUGCGcGCGCGCUUuaUCUG-----UUGC- -5'
24729 3' -52.1 NC_005264.1 + 40280 0.66 0.985311
Target:  5'- gGCGCuGCGUgacguuugucGUGUGAAagcugcgcGUAGACGGCGa -3'
miRNA:   3'- aCGUG-CGCG----------CGCGCUU--------UAUCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 101007 0.66 0.985134
Target:  5'- cGUACGCgGCGCagGCGAGccAGGCAcugcccgGCGa -3'
miRNA:   3'- aCGUGCG-CGCG--CGCUUuaUCUGU-------UGC- -5'
24729 3' -52.1 NC_005264.1 + 18037 0.66 0.983467
Target:  5'- aGUGCGUGcCGaCGCGAAGc-GGCGGCGc -3'
miRNA:   3'- aCGUGCGC-GC-GCGCUUUauCUGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 156687 0.66 0.983467
Target:  5'- uUGUACaGCcCGCGCGAGAcccaGGACGgGCGg -3'
miRNA:   3'- -ACGUG-CGcGCGCGCUUUa---UCUGU-UGC- -5'
24729 3' -52.1 NC_005264.1 + 30404 0.66 0.983467
Target:  5'- cGguCGCGCGCcgguGCGGAG-AGcuGCGGCGg -3'
miRNA:   3'- aCguGCGCGCG----CGCUUUaUC--UGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 29283 0.66 0.983467
Target:  5'- cUGUGCGCGgGCGCGugccu--CGACGu -3'
miRNA:   3'- -ACGUGCGCgCGCGCuuuaucuGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 74299 0.66 0.983467
Target:  5'- aGCgGCGgucugGCGCGCGgcAUGGcCAACGa -3'
miRNA:   3'- aCG-UGCg----CGCGCGCuuUAUCuGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 123113 0.66 0.983467
Target:  5'- uUGCACGgGCG-GCGucgcGGcACGACGg -3'
miRNA:   3'- -ACGUGCgCGCgCGCuuuaUC-UGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 4086 0.66 0.983467
Target:  5'- uUGCACGgGCG-GCGucgcGGcACGACGg -3'
miRNA:   3'- -ACGUGCgCGCgCGCuuuaUC-UGUUGC- -5'
24729 3' -52.1 NC_005264.1 + 149431 0.66 0.983467
Target:  5'- cGguCGCGCGCcgguGCGGAG-AGcuGCGGCGg -3'
miRNA:   3'- aCguGCGCGCG----CGCUUUaUC--UGUUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.