miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24729 5' -55.3 NC_005264.1 + 46954 0.67 0.929718
Target:  5'- cCCGacucCGUCUaGCGGCUCgCucaucGCGUGGg -3'
miRNA:   3'- aGGCa---GCAGA-UGCCGAG-Gu----UGCACCg -5'
24729 5' -55.3 NC_005264.1 + 157919 0.67 0.921212
Target:  5'- -gCGa-GUCUaaaucuaaguuagggACGGCggCCAGCGUGGCc -3'
miRNA:   3'- agGCagCAGA---------------UGCCGa-GGUUGCACCG- -5'
24729 5' -55.3 NC_005264.1 + 132766 0.67 0.918993
Target:  5'- gUCCGggCG-CgGCGGCgCCGACGaggGGCu -3'
miRNA:   3'- -AGGCa-GCaGaUGCCGaGGUUGCa--CCG- -5'
24729 5' -55.3 NC_005264.1 + 54410 0.67 0.918993
Target:  5'- gUCGUUGUUgcGCGGCgcgCCGACuagGGCg -3'
miRNA:   3'- aGGCAGCAGa-UGCCGa--GGUUGca-CCG- -5'
24729 5' -55.3 NC_005264.1 + 121676 0.67 0.915593
Target:  5'- cUCCGucUCGUCUACagaguccucuGGCcCCGACcgcgagggcagcgugGUGGCg -3'
miRNA:   3'- -AGGC--AGCAGAUG----------CCGaGGUUG---------------CACCG- -5'
24729 5' -55.3 NC_005264.1 + 2649 0.67 0.915593
Target:  5'- cUCCGucUCGUCUACagaguccucuGGCcCCGACcgcgagggcagcgugGUGGCg -3'
miRNA:   3'- -AGGC--AGCAGAUG----------CCGaGGUUG---------------CACCG- -5'
24729 5' -55.3 NC_005264.1 + 7410 0.67 0.907337
Target:  5'- gCCGUCGUCcauUGGUUCguGCGccgGGUg -3'
miRNA:   3'- aGGCAGCAGau-GCCGAGguUGCa--CCG- -5'
24729 5' -55.3 NC_005264.1 + 95442 0.67 0.901164
Target:  5'- gCCGUCGUggaauacgCUACcGCgCCGGCG-GGCg -3'
miRNA:   3'- aGGCAGCA--------GAUGcCGaGGUUGCaCCG- -5'
24729 5' -55.3 NC_005264.1 + 18159 0.67 0.901164
Target:  5'- aCUGUCGUCguCGGCgCCAcuguCGUGGg -3'
miRNA:   3'- aGGCAGCAGauGCCGaGGUu---GCACCg -5'
24729 5' -55.3 NC_005264.1 + 44898 0.68 0.88814
Target:  5'- gUCGUCGUCUGgGGCgggaggagagaUCCGGCGcaaGCg -3'
miRNA:   3'- aGGCAGCAGAUgCCG-----------AGGUUGCac-CG- -5'
24729 5' -55.3 NC_005264.1 + 59485 0.68 0.873517
Target:  5'- aCCGUCGUguacacgacuaCUuuguaGCGGCUCCAgucagaggugucgACcgGUGGCg -3'
miRNA:   3'- aGGCAGCA-----------GA-----UGCCGAGGU-------------UG--CACCG- -5'
24729 5' -55.3 NC_005264.1 + 149873 0.68 0.866962
Target:  5'- gUCGUCGUCggcgGCGGCgcgCCGccCGguaGGCa -3'
miRNA:   3'- aGGCAGCAGa---UGCCGa--GGUu-GCa--CCG- -5'
24729 5' -55.3 NC_005264.1 + 30847 0.68 0.866962
Target:  5'- gUCGUCGUCggcgGCGGCgcgCCGccCGguaGGCa -3'
miRNA:   3'- aGGCAGCAGa---UGCCGa--GGUu-GCa--CCG- -5'
24729 5' -55.3 NC_005264.1 + 154773 0.69 0.859484
Target:  5'- cCCGUgccCGaCUGCGGC-CgCGACGUGGg -3'
miRNA:   3'- aGGCA---GCaGAUGCCGaG-GUUGCACCg -5'
24729 5' -55.3 NC_005264.1 + 35747 0.69 0.859484
Target:  5'- cCCGUgccCGaCUGCGGC-CgCGACGUGGg -3'
miRNA:   3'- aGGCA---GCaGAUGCCGaG-GUUGCACCg -5'
24729 5' -55.3 NC_005264.1 + 21237 0.69 0.851806
Target:  5'- uUCCG-CGUUgacgACGGCUCgAGUGUGcGCg -3'
miRNA:   3'- -AGGCaGCAGa---UGCCGAGgUUGCAC-CG- -5'
24729 5' -55.3 NC_005264.1 + 73053 0.69 0.851806
Target:  5'- gCCGgCGguaUGCGGC-CagaGACGUGGCg -3'
miRNA:   3'- aGGCaGCag-AUGCCGaGg--UUGCACCG- -5'
24729 5' -55.3 NC_005264.1 + 102855 0.69 0.843933
Target:  5'- gCCGUC-UCgcucGCGGCcaCCGccGCGUGGCu -3'
miRNA:   3'- aGGCAGcAGa---UGCCGa-GGU--UGCACCG- -5'
24729 5' -55.3 NC_005264.1 + 114918 0.69 0.835872
Target:  5'- cUCCGUCGauaa-GGCUCCG-CG-GGCa -3'
miRNA:   3'- -AGGCAGCagaugCCGAGGUuGCaCCG- -5'
24729 5' -55.3 NC_005264.1 + 29588 0.7 0.810634
Target:  5'- cCUGuUUGcCUGCGGCUCCAgaucgaagcguaGCGcGGCg -3'
miRNA:   3'- aGGC-AGCaGAUGCCGAGGU------------UGCaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.