miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24730 3' -49.9 NC_005264.1 + 85050 0.66 0.998447
Target:  5'- gCCGuCugcGCCGCGGUgCGUCUCUGc -3'
miRNA:   3'- gGGCuGcuaUGGUGUUAgGUAGAGAC- -5'
24730 3' -49.9 NC_005264.1 + 114082 0.66 0.998447
Target:  5'- -aCGGCG-UACCGC--UCC-UCUCUGa -3'
miRNA:   3'- ggGCUGCuAUGGUGuuAGGuAGAGAC- -5'
24730 3' -49.9 NC_005264.1 + 105669 0.66 0.998136
Target:  5'- gCCGGCGGcagACCAUg--CgAUCUCUGc -3'
miRNA:   3'- gGGCUGCUa--UGGUGuuaGgUAGAGAC- -5'
24730 3' -49.9 NC_005264.1 + 138121 0.66 0.998136
Target:  5'- cCUgGACGAacCCAUGAUCgCGUCUCg- -3'
miRNA:   3'- -GGgCUGCUauGGUGUUAG-GUAGAGac -5'
24730 3' -49.9 NC_005264.1 + 32793 0.66 0.998136
Target:  5'- -gCGACGGUcugGCCGCAA-CCAUCaUCg- -3'
miRNA:   3'- ggGCUGCUA---UGGUGUUaGGUAG-AGac -5'
24730 3' -49.9 NC_005264.1 + 33961 0.66 0.997358
Target:  5'- -aCGAgCGGUGCCGCAAgCUGUCcgCUGg -3'
miRNA:   3'- ggGCU-GCUAUGGUGUUaGGUAGa-GAC- -5'
24730 3' -49.9 NC_005264.1 + 133444 0.66 0.997358
Target:  5'- -gCGGCGGUGCCGCAcgCUuacggCUCa- -3'
miRNA:   3'- ggGCUGCUAUGGUGUuaGGua---GAGac -5'
24730 3' -49.9 NC_005264.1 + 140867 0.67 0.996326
Target:  5'- gCCGGCGGcccuaccaaUGCCGCGA-CCAcUCUCg- -3'
miRNA:   3'- gGGCUGCU---------AUGGUGUUaGGU-AGAGac -5'
24730 3' -49.9 NC_005264.1 + 145580 0.67 0.995697
Target:  5'- gCgCGugGAUagcACUACGAUCCAUCa--- -3'
miRNA:   3'- -GgGCugCUA---UGGUGUUAGGUAGagac -5'
24730 3' -49.9 NC_005264.1 + 104996 0.67 0.994984
Target:  5'- gCUGACGAccguuUGCagCGCAccggCCAUCUCUGg -3'
miRNA:   3'- gGGCUGCU-----AUG--GUGUua--GGUAGAGAC- -5'
24730 3' -49.9 NC_005264.1 + 162265 0.67 0.994511
Target:  5'- gUCgGGCGAgucgucuugguccugUACCACGucgCCGUCUCUu -3'
miRNA:   3'- -GGgCUGCU---------------AUGGUGUua-GGUAGAGAc -5'
24730 3' -49.9 NC_005264.1 + 86583 0.68 0.99225
Target:  5'- gCCGugGcgACCGCAGUCaCggCUCc- -3'
miRNA:   3'- gGGCugCuaUGGUGUUAG-GuaGAGac -5'
24730 3' -49.9 NC_005264.1 + 16624 0.68 0.991113
Target:  5'- cCUCGGCGAUcgaCACGucgaGUgCGUCUCUGg -3'
miRNA:   3'- -GGGCUGCUAug-GUGU----UAgGUAGAGAC- -5'
24730 3' -49.9 NC_005264.1 + 117245 0.68 0.989848
Target:  5'- cCCCGGCGAUGCggagaACGAgaccgCgGUCUCg- -3'
miRNA:   3'- -GGGCUGCUAUGg----UGUUa----GgUAGAGac -5'
24730 3' -49.9 NC_005264.1 + 101035 0.69 0.986901
Target:  5'- gCCCGGCGAUGCCcGCGGcCCGguggagcugCUCg- -3'
miRNA:   3'- -GGGCUGCUAUGG-UGUUaGGUa--------GAGac -5'
24730 3' -49.9 NC_005264.1 + 144394 0.69 0.985199
Target:  5'- gCCCGACGcguuCCGCAuuaaGUUCGugUCUCUGu -3'
miRNA:   3'- -GGGCUGCuau-GGUGU----UAGGU--AGAGAC- -5'
24730 3' -49.9 NC_005264.1 + 17823 0.71 0.961526
Target:  5'- cUCCGACGAggggGCUAgAuccUCCAUCUCg- -3'
miRNA:   3'- -GGGCUGCUa---UGGUgUu--AGGUAGAGac -5'
24730 3' -49.9 NC_005264.1 + 85948 0.71 0.957829
Target:  5'- uCCCGGCaauGUACgGagaauuGUCCAUCUCUGg -3'
miRNA:   3'- -GGGCUGc--UAUGgUgu----UAGGUAGAGAC- -5'
24730 3' -49.9 NC_005264.1 + 57019 0.71 0.953895
Target:  5'- uUCCGcCGAUACCAUAA-CCAUUUCc- -3'
miRNA:   3'- -GGGCuGCUAUGGUGUUaGGUAGAGac -5'
24730 3' -49.9 NC_005264.1 + 118957 0.71 0.953895
Target:  5'- cUCCGGCGcccccuuUGCCGCGcucguUCCGUCUCUu -3'
miRNA:   3'- -GGGCUGCu------AUGGUGUu----AGGUAGAGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.