miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24730 5' -57.1 NC_005264.1 + 249 0.69 0.752534
Target:  5'- uUguGCGGCGGCgCUGGACGCgG-CAGa -3'
miRNA:   3'- uAguUGCUGCUG-GGCCUGCGgCaGUC- -5'
24730 5' -57.1 NC_005264.1 + 2752 0.67 0.848307
Target:  5'- uUUAACGGCGcguccCCCGG-CGCCGUa-- -3'
miRNA:   3'- uAGUUGCUGCu----GGGCCuGCGGCAguc -5'
24730 5' -57.1 NC_005264.1 + 3084 0.66 0.891578
Target:  5'- --uGGCGGCGGCCgaGGAC-CCGuUCGGg -3'
miRNA:   3'- uagUUGCUGCUGGg-CCUGcGGC-AGUC- -5'
24730 5' -57.1 NC_005264.1 + 3811 0.66 0.898047
Target:  5'- gGUCcGCGAguucgGGCCCGGGCgggGCCG-CAGg -3'
miRNA:   3'- -UAGuUGCUg----CUGGGCCUG---CGGCaGUC- -5'
24730 5' -57.1 NC_005264.1 + 6101 0.71 0.644446
Target:  5'- -gCGGCGGCaGACCCGGAUGaCGUCc- -3'
miRNA:   3'- uaGUUGCUG-CUGGGCCUGCgGCAGuc -5'
24730 5' -57.1 NC_005264.1 + 7058 0.78 0.273497
Target:  5'- -gCGGCGACGGCgCCGGccgGCGCCGUCGc -3'
miRNA:   3'- uaGUUGCUGCUG-GGCC---UGCGGCAGUc -5'
24730 5' -57.1 NC_005264.1 + 7392 0.74 0.441616
Target:  5'- uUCGAUcGCGGCCCcGGCGCCGUCGu -3'
miRNA:   3'- uAGUUGcUGCUGGGcCUGCGGCAGUc -5'
24730 5' -57.1 NC_005264.1 + 12879 0.83 0.145351
Target:  5'- -cCGAUGACGACCCGGACGgaCCGUCGa -3'
miRNA:   3'- uaGUUGCUGCUGGGCCUGC--GGCAGUc -5'
24730 5' -57.1 NC_005264.1 + 13175 0.69 0.7325
Target:  5'- -aCGACGACGACCuacgcgcugcgcgCGGAuccgucgccgcCGCCGUCGc -3'
miRNA:   3'- uaGUUGCUGCUGG-------------GCCU-----------GCGGCAGUc -5'
24730 5' -57.1 NC_005264.1 + 16473 0.67 0.848307
Target:  5'- -cCGACGACGcaGCCgCGGugGCCuG-CGGg -3'
miRNA:   3'- uaGUUGCUGC--UGG-GCCugCGG-CaGUC- -5'
24730 5' -57.1 NC_005264.1 + 16876 0.68 0.815612
Target:  5'- uGUCGGCGGCGGCaaaCGauauguCGCCGUCGu -3'
miRNA:   3'- -UAGUUGCUGCUGg--GCcu----GCGGCAGUc -5'
24730 5' -57.1 NC_005264.1 + 17368 0.66 0.904293
Target:  5'- --uGGCGGCGGCgCGGucuguguacguGCGCCGUuCGGu -3'
miRNA:   3'- uagUUGCUGCUGgGCC-----------UGCGGCA-GUC- -5'
24730 5' -57.1 NC_005264.1 + 18013 0.72 0.564434
Target:  5'- -aCGGCGGCGGgUCGGcCGCgGUCAGg -3'
miRNA:   3'- uaGUUGCUGCUgGGCCuGCGgCAGUC- -5'
24730 5' -57.1 NC_005264.1 + 19181 0.66 0.898047
Target:  5'- --gGAUGAUGGCuCCGGGgcCGaCCGUCGGc -3'
miRNA:   3'- uagUUGCUGCUG-GGCCU--GC-GGCAGUC- -5'
24730 5' -57.1 NC_005264.1 + 21242 0.68 0.780352
Target:  5'- cGUUGACGACGGCUCGaGugugcGCGCCG-CGGa -3'
miRNA:   3'- -UAGUUGCUGCUGGGC-C-----UGCGGCaGUC- -5'
24730 5' -57.1 NC_005264.1 + 21752 0.66 0.904293
Target:  5'- uUCGGCGGCGGCCgucuUGaGCGCCGUa-- -3'
miRNA:   3'- uAGUUGCUGCUGG----GCcUGCGGCAguc -5'
24730 5' -57.1 NC_005264.1 + 27920 0.68 0.78938
Target:  5'- -gCGACGACGACCgCGGuguuggcguucuGCG-CGUCGGu -3'
miRNA:   3'- uaGUUGCUGCUGG-GCC------------UGCgGCAGUC- -5'
24730 5' -57.1 NC_005264.1 + 30393 0.67 0.824045
Target:  5'- cUCGGCGGCGGCggUCGcGCGCCGgugCGGa -3'
miRNA:   3'- uAGUUGCUGCUG--GGCcUGCGGCa--GUC- -5'
24730 5' -57.1 NC_005264.1 + 35031 0.68 0.815612
Target:  5'- uGUCGGgaGAUGGCUCGcgcGACGUCGUCAGc -3'
miRNA:   3'- -UAGUUg-CUGCUGGGC---CUGCGGCAGUC- -5'
24730 5' -57.1 NC_005264.1 + 35499 0.67 0.8404
Target:  5'- -aCGACGGCGACgCCGcGGCGCaggugccccCGUCGc -3'
miRNA:   3'- uaGUUGCUGCUG-GGC-CUGCG---------GCAGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.