miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24731 3' -58.1 NC_005264.1 + 77168 0.67 0.727277
Target:  5'- aCUCCGCUUGCCa-GguCGCCuuAGAa -3'
miRNA:   3'- -GAGGUGAACGGcgCguGCGGugUCUa -5'
24731 3' -58.1 NC_005264.1 + 83394 0.72 0.441152
Target:  5'- -gCCGCUcGUCGUcuGCGCGCCGCGGGUc -3'
miRNA:   3'- gaGGUGAaCGGCG--CGUGCGGUGUCUA- -5'
24731 3' -58.1 NC_005264.1 + 88345 0.72 0.477985
Target:  5'- aUCCACcaGCCGCGCA-GCCACguAGAc -3'
miRNA:   3'- gAGGUGaaCGGCGCGUgCGGUG--UCUa -5'
24731 3' -58.1 NC_005264.1 + 90820 0.66 0.793473
Target:  5'- gUCuCGCguguggcgGCCGCGCACGUCGagcaAGAa -3'
miRNA:   3'- gAG-GUGaa------CGGCGCGUGCGGUg---UCUa -5'
24731 3' -58.1 NC_005264.1 + 91980 0.72 0.468631
Target:  5'- aCUCCgaGCUggcagaacGCCGCGUACGUgGCAGAg -3'
miRNA:   3'- -GAGG--UGAa-------CGGCGCGUGCGgUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 93687 0.67 0.756317
Target:  5'- -aCCGCgcuuaccgugGCaguaGCGCGgGCCACAGAUc -3'
miRNA:   3'- gaGGUGaa--------CGg---CGCGUgCGGUGUCUA- -5'
24731 3' -58.1 NC_005264.1 + 95644 0.68 0.717422
Target:  5'- -cCCACUauaggcGCCGCGUcauaGCGCUGCAGGc -3'
miRNA:   3'- gaGGUGAa-----CGGCGCG----UGCGGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 95866 0.68 0.717422
Target:  5'- -aCCAgguCUUGCCGUGC-CGCCugGGc- -3'
miRNA:   3'- gaGGU---GAACGGCGCGuGCGGugUCua -5'
24731 3' -58.1 NC_005264.1 + 103051 0.66 0.793473
Target:  5'- gCUCCGCggcggacacgGCCGUGgACaGCCACGGc- -3'
miRNA:   3'- -GAGGUGaa--------CGGCGCgUG-CGGUGUCua -5'
24731 3' -58.1 NC_005264.1 + 104529 0.66 0.802423
Target:  5'- cCUUCGCgggcaGCCGgcgaaGCGCGCCAuCAGAg -3'
miRNA:   3'- -GAGGUGaa---CGGCg----CGUGCGGU-GUCUa -5'
24731 3' -58.1 NC_005264.1 + 105339 0.69 0.636726
Target:  5'- gCUCuCGCc-GCCGCGCGCGCCAgCAu-- -3'
miRNA:   3'- -GAG-GUGaaCGGCGCGUGCGGU-GUcua -5'
24731 3' -58.1 NC_005264.1 + 113034 0.66 0.811221
Target:  5'- uUCCGCg-GCCGCGaCugGgCCGCGGc- -3'
miRNA:   3'- gAGGUGaaCGGCGC-GugC-GGUGUCua -5'
24731 3' -58.1 NC_005264.1 + 116375 0.75 0.324733
Target:  5'- aCUCCACaggcaaagagcGCCGCGCAaaaGCCGCAGGc -3'
miRNA:   3'- -GAGGUGaa---------CGGCGCGUg--CGGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 118674 0.66 0.793473
Target:  5'- aCUCCACaUGCCauuuacGCGguUGCCcuGCGGGUg -3'
miRNA:   3'- -GAGGUGaACGG------CGCguGCGG--UGUCUA- -5'
24731 3' -58.1 NC_005264.1 + 119255 0.66 0.793473
Target:  5'- -aUCGCUUuCCGUGCcugGCGCCACAGc- -3'
miRNA:   3'- gaGGUGAAcGGCGCG---UGCGGUGUCua -5'
24731 3' -58.1 NC_005264.1 + 122510 0.73 0.39747
Target:  5'- ---gGCUUGCCGcCGCACGCgGCGGGg -3'
miRNA:   3'- gaggUGAACGGC-GCGUGCGgUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 122780 0.66 0.828324
Target:  5'- -gCCuCUUGCCGCcgGgGCGCUGCGGGc -3'
miRNA:   3'- gaGGuGAACGGCG--CgUGCGGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 123023 0.69 0.636726
Target:  5'- gCUCCAuCUaggcggaugcgUGCCGCGCAuCGCCAacgAGAc -3'
miRNA:   3'- -GAGGU-GA-----------ACGGCGCGU-GCGGUg--UCUa -5'
24731 3' -58.1 NC_005264.1 + 123170 0.72 0.459372
Target:  5'- -gCCGCUUGUCGCGaugcuugccgccCACGCCGCGGu- -3'
miRNA:   3'- gaGGUGAACGGCGC------------GUGCGGUGUCua -5'
24731 3' -58.1 NC_005264.1 + 123284 0.73 0.41461
Target:  5'- gUCCcgGCUUGCCGCGCGgGaaCCGCGGGg -3'
miRNA:   3'- gAGG--UGAACGGCGCGUgC--GGUGUCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.