miRNA display CGI


Results 61 - 80 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24731 3' -58.1 NC_005264.1 + 124034 0.71 0.535874
Target:  5'- gUCCGC--GCCGgGguCGCCGCGGAg -3'
miRNA:   3'- gAGGUGaaCGGCgCguGCGGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 126015 0.73 0.405127
Target:  5'- gUCUACgaucuucGCCGCGCcucgccuGCGCCGCAGAg -3'
miRNA:   3'- gAGGUGaa-----CGGCGCG-------UGCGGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 127569 0.67 0.727277
Target:  5'- -aCCACg-GCCGCGCccGCGCCAguGu- -3'
miRNA:   3'- gaGGUGaaCGGCGCG--UGCGGUguCua -5'
24731 3' -58.1 NC_005264.1 + 128035 0.66 0.784379
Target:  5'- -aCCACUcGaCGCGCAUGaCACGGAUg -3'
miRNA:   3'- gaGGUGAaCgGCGCGUGCgGUGUCUA- -5'
24731 3' -58.1 NC_005264.1 + 131001 0.74 0.364588
Target:  5'- -cCCAuguCUUGCCGCGCGCGgCACGGc- -3'
miRNA:   3'- gaGGU---GAACGGCGCGUGCgGUGUCua -5'
24731 3' -58.1 NC_005264.1 + 132607 0.86 0.061476
Target:  5'- -aCCGCuUUGCCGCGCugGCCGCGGAa -3'
miRNA:   3'- gaGGUG-AACGGCGCGugCGGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 134787 0.66 0.808598
Target:  5'- uUCCGCgcgcuuuuacccggcGUCGCGCGCGCCGgaAGAc -3'
miRNA:   3'- gAGGUGaa-------------CGGCGCGUGCGGUg-UCUa -5'
24731 3' -58.1 NC_005264.1 + 135759 0.67 0.775149
Target:  5'- uUCUACUcgGuuGCGCACGCgGCGa-- -3'
miRNA:   3'- gAGGUGAa-CggCGCGUGCGgUGUcua -5'
24731 3' -58.1 NC_005264.1 + 137132 0.7 0.575797
Target:  5'- -aCCGC-UGCCGCcCGCGCCAaAGAUg -3'
miRNA:   3'- gaGGUGaACGGCGcGUGCGGUgUCUA- -5'
24731 3' -58.1 NC_005264.1 + 140637 1.06 0.002479
Target:  5'- aCUCCACUUGCCGCGCACGCCACAGAUg -3'
miRNA:   3'- -GAGGUGAACGGCGCGUGCGGUGUCUA- -5'
24731 3' -58.1 NC_005264.1 + 141756 0.69 0.667243
Target:  5'- gCUCCACgaUGCCG---ACGCCGCGGAa -3'
miRNA:   3'- -GAGGUGa-ACGGCgcgUGCGGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 144292 0.66 0.793473
Target:  5'- gCUCCgACUgacGCCG-GCGCGCCcuCAGGg -3'
miRNA:   3'- -GAGG-UGAa--CGGCgCGUGCGGu-GUCUa -5'
24731 3' -58.1 NC_005264.1 + 144949 0.67 0.746734
Target:  5'- aUCaGC-UGCUGUGCGCGCCGUAGAUc -3'
miRNA:   3'- gAGgUGaACGGCGCGUGCGGUGUCUA- -5'
24731 3' -58.1 NC_005264.1 + 145088 0.68 0.714451
Target:  5'- gCUCUcCUUGCCGCGaacuuggcauagguUGCGCCGCGGc- -3'
miRNA:   3'- -GAGGuGAACGGCGC--------------GUGCGGUGUCua -5'
24731 3' -58.1 NC_005264.1 + 148499 0.66 0.793473
Target:  5'- --gCGCUgGUCGCGUuggcggcgaGCGCCGCGGAa -3'
miRNA:   3'- gagGUGAaCGGCGCG---------UGCGGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 150858 0.7 0.596021
Target:  5'- aCUCUGCcgUGCCGCGCGCGgCA-AGAc -3'
miRNA:   3'- -GAGGUGa-ACGGCGCGUGCgGUgUCUa -5'
24731 3' -58.1 NC_005264.1 + 156101 0.74 0.356667
Target:  5'- --aCACUUcCCGCGcCACGCCGCGGAg -3'
miRNA:   3'- gagGUGAAcGGCGC-GUGCGGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 157108 0.67 0.737051
Target:  5'- aUCCGCUaGCUcuauuGCuGCGCGCUAUAGAg -3'
miRNA:   3'- gAGGUGAaCGG-----CG-CGUGCGGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 157309 0.66 0.793473
Target:  5'- -cCCGCU--CCGCGCgagACGCCGCGGc- -3'
miRNA:   3'- gaGGUGAacGGCGCG---UGCGGUGUCua -5'
24731 3' -58.1 NC_005264.1 + 159527 0.72 0.48743
Target:  5'- gCUCCGCUUGCacgGCGCGCGaucCCGCGcGAg -3'
miRNA:   3'- -GAGGUGAACGg--CGCGUGC---GGUGU-CUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.