Results 41 - 60 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24731 | 3' | -58.1 | NC_005264.1 | + | 77168 | 0.67 | 0.727277 |
Target: 5'- aCUCCGCUUGCCa-GguCGCCuuAGAa -3' miRNA: 3'- -GAGGUGAACGGcgCguGCGGugUCUa -5' |
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24731 | 3' | -58.1 | NC_005264.1 | + | 76401 | 0.73 | 0.405983 |
Target: 5'- uCUCCAUUaUGCCGUGCgcgauuggguGCGCCACGGu- -3' miRNA: 3'- -GAGGUGA-ACGGCGCG----------UGCGGUGUCua -5' |
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24731 | 3' | -58.1 | NC_005264.1 | + | 64514 | 0.7 | 0.555731 |
Target: 5'- -aCCGCgcuguucUGuCCGCGC-CGCCGCGGAg -3' miRNA: 3'- gaGGUGa------AC-GGCGCGuGCGGUGUCUa -5' |
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24731 | 3' | -58.1 | NC_005264.1 | + | 61801 | 0.66 | 0.811221 |
Target: 5'- gCUCCACcggGCCGCggGCAuCGCCggGCAGu- -3' miRNA: 3'- -GAGGUGaa-CGGCG--CGU-GCGG--UGUCua -5' |
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24731 | 3' | -58.1 | NC_005264.1 | + | 59788 | 0.75 | 0.333635 |
Target: 5'- gUCCACg-GCCGUGUcCGCCGCGGAg -3' miRNA: 3'- gAGGUGaaCGGCGCGuGCGGUGUCUa -5' |
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24731 | 3' | -58.1 | NC_005264.1 | + | 59123 | 0.72 | 0.48743 |
Target: 5'- -gCCGCUgaUGCCGCGC-CGCCGCu--- -3' miRNA: 3'- gaGGUGA--ACGGCGCGuGCGGUGucua -5' |
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24731 | 3' | -58.1 | NC_005264.1 | + | 58742 | 0.66 | 0.811221 |
Target: 5'- aUCCGCg-GCCGcCGCuGCGCUAuCAGAg -3' miRNA: 3'- gAGGUGaaCGGC-GCG-UGCGGU-GUCUa -5' |
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24731 | 3' | -58.1 | NC_005264.1 | + | 56744 | 0.67 | 0.775149 |
Target: 5'- uUCCGCggagGCCGagauuggcaCGCACGCCAagcaaGGAa -3' miRNA: 3'- gAGGUGaa--CGGC---------GCGUGCGGUg----UCUa -5' |
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24731 | 3' | -58.1 | NC_005264.1 | + | 56313 | 0.68 | 0.68746 |
Target: 5'- aCUCCGCg-GCCGCGC-UGCCGCc--- -3' miRNA: 3'- -GAGGUGaaCGGCGCGuGCGGUGucua -5' |
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24731 | 3' | -58.1 | NC_005264.1 | + | 56130 | 0.66 | 0.793473 |
Target: 5'- -aCCACUaggcgcgcgagUGUCGCGUugGCCGCu--- -3' miRNA: 3'- gaGGUGA-----------ACGGCGCGugCGGUGucua -5' |
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24731 | 3' | -58.1 | NC_005264.1 | + | 53019 | 0.66 | 0.793473 |
Target: 5'- cCUCCGCaaccUGCa-CGCACGUCAUGGAa -3' miRNA: 3'- -GAGGUGa---ACGgcGCGUGCGGUGUCUa -5' |
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24731 | 3' | -58.1 | NC_005264.1 | + | 52943 | 0.68 | 0.707495 |
Target: 5'- -gCCGCgcccGCgGCGCauuGCGCCGCGGGg -3' miRNA: 3'- gaGGUGaa--CGgCGCG---UGCGGUGUCUa -5' |
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24731 | 3' | -58.1 | NC_005264.1 | + | 52800 | 0.72 | 0.441152 |
Target: 5'- -gUCGCUUGCCGCGC-CGCUGCAa-- -3' miRNA: 3'- gaGGUGAACGGCGCGuGCGGUGUcua -5' |
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24731 | 3' | -58.1 | NC_005264.1 | + | 48695 | 0.66 | 0.811221 |
Target: 5'- gUCUGCUcGUCGCGguCGCuCGCGGGa -3' miRNA: 3'- gAGGUGAaCGGCGCguGCG-GUGUCUa -5' |
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24731 | 3' | -58.1 | NC_005264.1 | + | 46551 | 0.66 | 0.828324 |
Target: 5'- -gCCACagccguaGCCGCcCGCGCCACGGc- -3' miRNA: 3'- gaGGUGaa-----CGGCGcGUGCGGUGUCua -5' |
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24731 | 3' | -58.1 | NC_005264.1 | + | 44794 | 0.66 | 0.811221 |
Target: 5'- -gCCGac-GCCGCGguCGCCGCGGc- -3' miRNA: 3'- gaGGUgaaCGGCGCguGCGGUGUCua -5' |
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24731 | 3' | -58.1 | NC_005264.1 | + | 42267 | 0.69 | 0.657087 |
Target: 5'- -cCCGCcuaUUGCCgGCGCggucaACGCCGCGGGg -3' miRNA: 3'- gaGGUG---AACGG-CGCG-----UGCGGUGUCUa -5' |
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24731 | 3' | -58.1 | NC_005264.1 | + | 40806 | 0.68 | 0.67737 |
Target: 5'- -gCCGCUUGCCGCGgGguCGCCG-AGAc -3' miRNA: 3'- gaGGUGAACGGCGCgU--GCGGUgUCUa -5' |
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24731 | 3' | -58.1 | NC_005264.1 | + | 34272 | 0.8 | 0.170467 |
Target: 5'- aUCCGCgUGCUGCGCucCGCCGCGGAa -3' miRNA: 3'- gAGGUGaACGGCGCGu-GCGGUGUCUa -5' |
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24731 | 3' | -58.1 | NC_005264.1 | + | 33791 | 0.68 | 0.697505 |
Target: 5'- -aUCGa--GCCGCGCACGCCGCuuuGGAc -3' miRNA: 3'- gaGGUgaaCGGCGCGUGCGGUG---UCUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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