miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24731 3' -58.1 NC_005264.1 + 123023 0.69 0.636726
Target:  5'- gCUCCAuCUaggcggaugcgUGCCGCGCAuCGCCAacgAGAc -3'
miRNA:   3'- -GAGGU-GA-----------ACGGCGCGU-GCGGUg--UCUa -5'
24731 3' -58.1 NC_005264.1 + 105339 0.69 0.636726
Target:  5'- gCUCuCGCc-GCCGCGCGCGCCAgCAu-- -3'
miRNA:   3'- -GAG-GUGaaCGGCGCGUGCGGU-GUcua -5'
24731 3' -58.1 NC_005264.1 + 91980 0.72 0.468631
Target:  5'- aCUCCgaGCUggcagaacGCCGCGUACGUgGCAGAg -3'
miRNA:   3'- -GAGG--UGAa-------CGGCGCGUGCGgUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 104529 0.66 0.802423
Target:  5'- cCUUCGCgggcaGCCGgcgaaGCGCGCCAuCAGAg -3'
miRNA:   3'- -GAGGUGaa---CGGCg----CGUGCGGU-GUCUa -5'
24731 3' -58.1 NC_005264.1 + 134787 0.66 0.808598
Target:  5'- uUCCGCgcgcuuuuacccggcGUCGCGCGCGCCGgaAGAc -3'
miRNA:   3'- gAGGUGaa-------------CGGCGCGUGCGGUg-UCUa -5'
24731 3' -58.1 NC_005264.1 + 31832 0.7 0.596021
Target:  5'- aCUCUGCcgUGCCGCGCGCGgCA-AGAc -3'
miRNA:   3'- -GAGGUGa-ACGGCGCGUGCgGUgUCUa -5'
24731 3' -58.1 NC_005264.1 + 159527 0.72 0.48743
Target:  5'- gCUCCGCUUGCacgGCGCGCGaucCCGCGcGAg -3'
miRNA:   3'- -GAGGUGAACGg--CGCGUGC---GGUGU-CUa -5'
24731 3' -58.1 NC_005264.1 + 29975 0.66 0.823264
Target:  5'- gUCCGCgucccugGCCGCuggcaacguugauguGUguagaGCGCCGCAGAUg -3'
miRNA:   3'- gAGGUGaa-----CGGCG---------------CG-----UGCGGUGUCUA- -5'
24731 3' -58.1 NC_005264.1 + 5007 0.71 0.535874
Target:  5'- gUCCGC--GCCGgGguCGCCGCGGAg -3'
miRNA:   3'- gAGGUGaaCGGCgCguGCGGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 116375 0.75 0.324733
Target:  5'- aCUCCACaggcaaagagcGCCGCGCAaaaGCCGCAGGc -3'
miRNA:   3'- -GAGGUGaa---------CGGCGCGUg--CGGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 228 0.66 0.793473
Target:  5'- -aUCGCUUuCCGUGCcugGCGCCACAGc- -3'
miRNA:   3'- gaGGUGAAcGGCGCG---UGCGGUGUCua -5'
24731 3' -58.1 NC_005264.1 + 132607 0.86 0.061476
Target:  5'- -aCCGCuUUGCCGCGCugGCCGCGGAa -3'
miRNA:   3'- gaGGUG-AACGGCGCGugCGGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 21237 0.69 0.636726
Target:  5'- uUCCGCguugacgacgGCUcgaguGUGCGCGCCGCGGAg -3'
miRNA:   3'- gAGGUGaa--------CGG-----CGCGUGCGGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 95644 0.68 0.717422
Target:  5'- -cCCACUauaggcGCCGCGUcauaGCGCUGCAGGc -3'
miRNA:   3'- gaGGUGAa-----CGGCGCG----UGCGGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 145088 0.68 0.714451
Target:  5'- gCUCUcCUUGCCGCGaacuuggcauagguUGCGCCGCGGc- -3'
miRNA:   3'- -GAGGuGAACGGCGC--------------GUGCGGUGUCua -5'
24731 3' -58.1 NC_005264.1 + 42267 0.69 0.657087
Target:  5'- -cCCGCcuaUUGCCgGCGCggucaACGCCGCGGGg -3'
miRNA:   3'- gaGGUG---AACGG-CGCG-----UGCGGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 9008 0.66 0.784379
Target:  5'- -aCCACUcGaCGCGCAUGaCACGGAUg -3'
miRNA:   3'- gaGGUGAaCgGCGCGUGCgGUGUCUA- -5'
24731 3' -58.1 NC_005264.1 + 144292 0.66 0.793473
Target:  5'- gCUCCgACUgacGCCG-GCGCGCCcuCAGGg -3'
miRNA:   3'- -GAGG-UGAa--CGGCgCGUGCGGu-GUCUa -5'
24731 3' -58.1 NC_005264.1 + 103051 0.66 0.793473
Target:  5'- gCUCCGCggcggacacgGCCGUGgACaGCCACGGc- -3'
miRNA:   3'- -GAGGUGaa--------CGGCGCgUG-CGGUGUCua -5'
24731 3' -58.1 NC_005264.1 + 118674 0.66 0.793473
Target:  5'- aCUCCACaUGCCauuuacGCGguUGCCcuGCGGGUg -3'
miRNA:   3'- -GAGGUGaACGG------CGCguGCGG--UGUCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.