miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24731 3' -58.1 NC_005264.1 + 53019 0.66 0.793473
Target:  5'- cCUCCGCaaccUGCa-CGCACGUCAUGGAa -3'
miRNA:   3'- -GAGGUGa---ACGgcGCGUGCGGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 119255 0.66 0.793473
Target:  5'- -aUCGCUUuCCGUGCcugGCGCCACAGc- -3'
miRNA:   3'- gaGGUGAAcGGCGCG---UGCGGUGUCua -5'
24731 3' -58.1 NC_005264.1 + 148499 0.66 0.793473
Target:  5'- --gCGCUgGUCGCGUuggcggcgaGCGCCGCGGAa -3'
miRNA:   3'- gagGUGAaCGGCGCG---------UGCGGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 103051 0.66 0.793473
Target:  5'- gCUCCGCggcggacacgGCCGUGgACaGCCACGGc- -3'
miRNA:   3'- -GAGGUGaa--------CGGCGCgUG-CGGUGUCua -5'
24731 3' -58.1 NC_005264.1 + 90820 0.66 0.793473
Target:  5'- gUCuCGCguguggcgGCCGCGCACGUCGagcaAGAa -3'
miRNA:   3'- gAG-GUGaa------CGGCGCGUGCGGUg---UCUa -5'
24731 3' -58.1 NC_005264.1 + 144292 0.66 0.793473
Target:  5'- gCUCCgACUgacGCCG-GCGCGCCcuCAGGg -3'
miRNA:   3'- -GAGG-UGAa--CGGCgCGUGCGGu-GUCUa -5'
24731 3' -58.1 NC_005264.1 + 157309 0.66 0.793473
Target:  5'- -cCCGCU--CCGCGCgagACGCCGCGGc- -3'
miRNA:   3'- gaGGUGAacGGCGCG---UGCGGUGUCua -5'
24731 3' -58.1 NC_005264.1 + 128035 0.66 0.784379
Target:  5'- -aCCACUcGaCGCGCAUGaCACGGAUg -3'
miRNA:   3'- gaGGUGAaCgGCGCGUGCgGUGUCUA- -5'
24731 3' -58.1 NC_005264.1 + 9008 0.66 0.784379
Target:  5'- -aCCACUcGaCGCGCAUGaCACGGAUg -3'
miRNA:   3'- gaGGUGAaCgGCGCGUGCgGUGUCUA- -5'
24731 3' -58.1 NC_005264.1 + 56744 0.67 0.775149
Target:  5'- uUCCGCggagGCCGagauuggcaCGCACGCCAagcaaGGAa -3'
miRNA:   3'- gAGGUGaa--CGGC---------GCGUGCGGUg----UCUa -5'
24731 3' -58.1 NC_005264.1 + 135759 0.67 0.775149
Target:  5'- uUCUACUcgGuuGCGCACGCgGCGa-- -3'
miRNA:   3'- gAGGUGAa-CggCGCGUGCGgUGUcua -5'
24731 3' -58.1 NC_005264.1 + 31259 0.67 0.769549
Target:  5'- cCUCCACaccuaggcgccaggUGCCGCGCACa-UGCAGAa -3'
miRNA:   3'- -GAGGUGa-------------ACGGCGCGUGcgGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 93687 0.67 0.756317
Target:  5'- -aCCGCgcuuaccgugGCaguaGCGCGgGCCACAGAUc -3'
miRNA:   3'- gaGGUGaa--------CGg---CGCGUgCGGUGUCUA- -5'
24731 3' -58.1 NC_005264.1 + 144949 0.67 0.746734
Target:  5'- aUCaGC-UGCUGUGCGCGCCGUAGAUc -3'
miRNA:   3'- gAGgUGaACGGCGCGUGCGGUGUCUA- -5'
24731 3' -58.1 NC_005264.1 + 157108 0.67 0.737051
Target:  5'- aUCCGCUaGCUcuauuGCuGCGCGCUAUAGAg -3'
miRNA:   3'- gAGGUGAaCGG-----CG-CGUGCGGUGUCUa -5'
24731 3' -58.1 NC_005264.1 + 77168 0.67 0.727277
Target:  5'- aCUCCGCUUGCCa-GguCGCCuuAGAa -3'
miRNA:   3'- -GAGGUGAACGGcgCguGCGGugUCUa -5'
24731 3' -58.1 NC_005264.1 + 127569 0.67 0.727277
Target:  5'- -aCCACg-GCCGCGCccGCGCCAguGu- -3'
miRNA:   3'- gaGGUGaaCGGCGCG--UGCGGUguCua -5'
24731 3' -58.1 NC_005264.1 + 12959 0.68 0.717422
Target:  5'- -cCUACcggGCgGCGCGCGCCGCcGAc -3'
miRNA:   3'- gaGGUGaa-CGgCGCGUGCGGUGuCUa -5'
24731 3' -58.1 NC_005264.1 + 95866 0.68 0.717422
Target:  5'- -aCCAgguCUUGCCGUGC-CGCCugGGc- -3'
miRNA:   3'- gaGGU---GAACGGCGCGuGCGGugUCua -5'
24731 3' -58.1 NC_005264.1 + 95644 0.68 0.717422
Target:  5'- -cCCACUauaggcGCCGCGUcauaGCGCUGCAGGc -3'
miRNA:   3'- gaGGUGAa-----CGGCGCG----UGCGGUGUCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.