miRNA display CGI


Results 61 - 80 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24731 5' -54.2 NC_005264.1 + 150167 0.66 0.954991
Target:  5'- -gGGCCACGauaaaauuGCUGCCGgcCGGCCUUAAu -3'
miRNA:   3'- ggUUGGUGC--------CGGCGGC--GUUGGAAUUc -5'
24731 5' -54.2 NC_005264.1 + 113480 0.66 0.954991
Target:  5'- uCguGCCACGGUCGCgcgagugccaacCGCGACCc---- -3'
miRNA:   3'- -GguUGGUGCCGGCG------------GCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 151842 0.66 0.954991
Target:  5'- -aGACUggGGCCGCCGCu-CCg---- -3'
miRNA:   3'- ggUUGGugCCGGCGGCGuuGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 51087 0.66 0.954991
Target:  5'- aCCugcuUCGCGGUCGCCGguGCUg---- -3'
miRNA:   3'- -GGuu--GGUGCCGGCGGCguUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 33940 0.66 0.954991
Target:  5'- -aGGCCGUGGCgCGCCGgGACCg---- -3'
miRNA:   3'- ggUUGGUGCCG-GCGGCgUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 102116 0.66 0.962327
Target:  5'- gCUGGCgGCGGUacgagGCCGCGGCCa---- -3'
miRNA:   3'- -GGUUGgUGCCGg----CGGCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 135571 0.66 0.950982
Target:  5'- -aAGCCGCGcGUCGCuCGCGACUa---- -3'
miRNA:   3'- ggUUGGUGC-CGGCG-GCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 152967 0.66 0.954991
Target:  5'- -aGGCCGUGGCgCGCCGgGACCg---- -3'
miRNA:   3'- ggUUGGUGCCG-GCGGCgUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 109721 0.67 0.946742
Target:  5'- cCCGGCCuccuCGGCCcccucGCCGagcGCCUUGu- -3'
miRNA:   3'- -GGUUGGu---GCCGG-----CGGCgu-UGGAAUuc -5'
24731 5' -54.2 NC_005264.1 + 154493 0.67 0.942267
Target:  5'- aUCAGCgACGGUCGCCcccucaAACCcUAGGg -3'
miRNA:   3'- -GGUUGgUGCCGGCGGcg----UUGGaAUUC- -5'
24731 5' -54.2 NC_005264.1 + 82955 0.67 0.942267
Target:  5'- gCCuGCgACGGUCGCCGCcgcGCCc---- -3'
miRNA:   3'- -GGuUGgUGCCGGCGGCGu--UGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 142964 0.67 0.946742
Target:  5'- gCUAG-CGCGGCCGCgGCggUCUcucgggcaUGAGg -3'
miRNA:   3'- -GGUUgGUGCCGGCGgCGuuGGA--------AUUC- -5'
24731 5' -54.2 NC_005264.1 + 6256 0.67 0.946742
Target:  5'- cUCcgUCGCGGUCGUCGCcGCCgucggGAGg -3'
miRNA:   3'- -GGuuGGUGCCGGCGGCGuUGGaa---UUC- -5'
24731 5' -54.2 NC_005264.1 + 87522 0.67 0.927411
Target:  5'- gCGAUCgAUGaGCCGcCCGCGGCCUccGAGg -3'
miRNA:   3'- gGUUGG-UGC-CGGC-GGCGUUGGAa-UUC- -5'
24731 5' -54.2 NC_005264.1 + 27987 0.67 0.942267
Target:  5'- aCGACCGCcGuaGCCGCGGCCc---- -3'
miRNA:   3'- gGUUGGUGcCggCGGCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 30853 0.67 0.927411
Target:  5'- gUCGGCgGCGGCgCGCCGC--CCggUAGGc -3'
miRNA:   3'- -GGUUGgUGCCG-GCGGCGuuGGa-AUUC- -5'
24731 5' -54.2 NC_005264.1 + 94284 0.67 0.926879
Target:  5'- aCUGACUAUGGUCGCCGaguauuuCGACCccGAGa -3'
miRNA:   3'- -GGUUGGUGCCGGCGGC-------GUUGGaaUUC- -5'
24731 5' -54.2 NC_005264.1 + 64406 0.67 0.946742
Target:  5'- cCCGGCCAaGGCCgacGCCGCGGgCa---- -3'
miRNA:   3'- -GGUUGGUgCCGG---CGGCGUUgGaauuc -5'
24731 5' -54.2 NC_005264.1 + 105980 0.67 0.946742
Target:  5'- cCUAGCCAUGGCCcCCaggaGCAAUCUg--- -3'
miRNA:   3'- -GGUUGGUGCCGGcGG----CGUUGGAauuc -5'
24731 5' -54.2 NC_005264.1 + 125283 0.67 0.946742
Target:  5'- cUCcgUCGCGGUCGUCGCcGCCgucggGAGg -3'
miRNA:   3'- -GGuuGGUGCCGGCGGCGuUGGaa---UUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.