miRNA display CGI


Results 81 - 100 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24731 5' -54.2 NC_005264.1 + 66611 0.67 0.927411
Target:  5'- --cGCCGCGuugccggcGCCGUCGCGGCCcgAGGc -3'
miRNA:   3'- gguUGGUGC--------CGGCGGCGUUGGaaUUC- -5'
24731 5' -54.2 NC_005264.1 + 149879 0.67 0.927411
Target:  5'- gUCGGCgGCGGCgCGCCGC--CCggUAGGc -3'
miRNA:   3'- -GGUUGgUGCCG-GCGGCGuuGGa-AUUC- -5'
24731 5' -54.2 NC_005264.1 + 60004 0.67 0.932603
Target:  5'- aCGGCCGC-GUgGCCGCGGCCc-AAGa -3'
miRNA:   3'- gGUUGGUGcCGgCGGCGUUGGaaUUC- -5'
24731 5' -54.2 NC_005264.1 + 51432 0.67 0.937554
Target:  5'- uCCGGCa--GGCCGCCcuccaCGACCUUGu- -3'
miRNA:   3'- -GGUUGgugCCGGCGGc----GUUGGAAUuc -5'
24731 5' -54.2 NC_005264.1 + 142581 0.67 0.932603
Target:  5'- cCCcuCCGCgaGGCCgcGCCGCAACCc---- -3'
miRNA:   3'- -GGuuGGUG--CCGG--CGGCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 79123 0.67 0.932603
Target:  5'- gCC-GCCGCGuaccuaGCCGCCGCcACCg---- -3'
miRNA:   3'- -GGuUGGUGC------CGGCGGCGuUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 162588 0.67 0.927411
Target:  5'- uUCuGCCGCGuccagcGCCGCCGCAcaaACCUc--- -3'
miRNA:   3'- -GGuUGGUGC------CGGCGGCGU---UGGAauuc -5'
24731 5' -54.2 NC_005264.1 + 156592 0.67 0.927411
Target:  5'- aCCAGacugaggauCCGCggGGCCGCCGCAgaACCc---- -3'
miRNA:   3'- -GGUU---------GGUG--CCGGCGGCGU--UGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 87522 0.67 0.927411
Target:  5'- gCGAUCgAUGaGCCGcCCGCGGCCUccGAGg -3'
miRNA:   3'- gGUUGG-UGC-CGGC-GGCGUUGGAa-UUC- -5'
24731 5' -54.2 NC_005264.1 + 36654 0.67 0.927411
Target:  5'- cCCGugCGCGGauggaCCugGCCGCGACCa---- -3'
miRNA:   3'- -GGUugGUGCC-----GG--CGGCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 147355 0.67 0.927411
Target:  5'- gCCAGgcCCAUGcCCGCCGCGAUCg---- -3'
miRNA:   3'- -GGUU--GGUGCcGGCGGCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 100615 0.67 0.942267
Target:  5'- aCGACCccgaaGCGGCCGCggagCGCGcCCUcAAGu -3'
miRNA:   3'- gGUUGG-----UGCCGGCG----GCGUuGGAaUUC- -5'
24731 5' -54.2 NC_005264.1 + 94284 0.67 0.926879
Target:  5'- aCUGACUAUGGUCGCCGaguauuuCGACCccGAGa -3'
miRNA:   3'- -GGUUGGUGCCGGCGGC-------GUUGGaaUUC- -5'
24731 5' -54.2 NC_005264.1 + 6256 0.67 0.946742
Target:  5'- cUCcgUCGCGGUCGUCGCcGCCgucggGAGg -3'
miRNA:   3'- -GGuuGGUGCCGGCGGCGuUGGaa---UUC- -5'
24731 5' -54.2 NC_005264.1 + 142964 0.67 0.946742
Target:  5'- gCUAG-CGCGGCCGCgGCggUCUcucgggcaUGAGg -3'
miRNA:   3'- -GGUUgGUGCCGGCGgCGuuGGA--------AUUC- -5'
24731 5' -54.2 NC_005264.1 + 30853 0.67 0.927411
Target:  5'- gUCGGCgGCGGCgCGCCGC--CCggUAGGc -3'
miRNA:   3'- -GGUUGgUGCCG-GCGGCGuuGGa-AUUC- -5'
24731 5' -54.2 NC_005264.1 + 56228 0.67 0.932603
Target:  5'- aCCGuccuUCACGuaCGCCGCGACCc---- -3'
miRNA:   3'- -GGUu---GGUGCcgGCGGCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 49325 0.67 0.932603
Target:  5'- aCCucCCGCGGCUGuUCGCGcucgGCCcgGAGg -3'
miRNA:   3'- -GGuuGGUGCCGGC-GGCGU----UGGaaUUC- -5'
24731 5' -54.2 NC_005264.1 + 72018 0.67 0.926879
Target:  5'- aCGugCGCGGCCGCCacacgcgagacguGCuGACCUc--- -3'
miRNA:   3'- gGUugGUGCCGGCGG-------------CG-UUGGAauuc -5'
24731 5' -54.2 NC_005264.1 + 56318 0.67 0.932603
Target:  5'- gCGGCCGCGcugccGCCGUCGCGcACCg---- -3'
miRNA:   3'- gGUUGGUGC-----CGGCGGCGU-UGGaauuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.