miRNA display CGI


Results 101 - 120 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24731 5' -54.2 NC_005264.1 + 134922 0.67 0.942267
Target:  5'- gCCAacACCGCGGUCGUCGUcGCUc---- -3'
miRNA:   3'- -GGU--UGGUGCCGGCGGCGuUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 4133 0.67 0.937554
Target:  5'- gCCAAaCACGGCCGCuuguCGCGAUgCUUGc- -3'
miRNA:   3'- -GGUUgGUGCCGGCG----GCGUUG-GAAUuc -5'
24731 5' -54.2 NC_005264.1 + 30853 0.67 0.927411
Target:  5'- gUCGGCgGCGGCgCGCCGC--CCggUAGGc -3'
miRNA:   3'- -GGUUGgUGCCG-GCGGCGuuGGa-AUUC- -5'
24731 5' -54.2 NC_005264.1 + 109721 0.67 0.946742
Target:  5'- cCCGGCCuccuCGGCCcccucGCCGagcGCCUUGu- -3'
miRNA:   3'- -GGUUGGu---GCCGG-----CGGCgu-UGGAAUuc -5'
24731 5' -54.2 NC_005264.1 + 154493 0.67 0.942267
Target:  5'- aUCAGCgACGGUCGCCcccucaAACCcUAGGg -3'
miRNA:   3'- -GGUUGgUGCCGGCGGcg----UUGGaAUUC- -5'
24731 5' -54.2 NC_005264.1 + 149420 0.67 0.942267
Target:  5'- cUCGGCgGCGGCgGUCGCGcGCCggugcgGAGa -3'
miRNA:   3'- -GGUUGgUGCCGgCGGCGU-UGGaa----UUC- -5'
24731 5' -54.2 NC_005264.1 + 63081 0.67 0.942267
Target:  5'- cUCGGCgAgGGCCGUCGCGgaaagGCCUa--- -3'
miRNA:   3'- -GGUUGgUgCCGGCGGCGU-----UGGAauuc -5'
24731 5' -54.2 NC_005264.1 + 156612 0.67 0.937554
Target:  5'- gCAAgucUCGCGGCgGCCGCGGCgg-GGGg -3'
miRNA:   3'- gGUU---GGUGCCGgCGGCGUUGgaaUUC- -5'
24731 5' -54.2 NC_005264.1 + 123160 0.67 0.937554
Target:  5'- gCCAAaCACGGCCGCuuguCGCGAUgCUUGc- -3'
miRNA:   3'- -GGUUgGUGCCGGCG----GCGUUG-GAAUuc -5'
24731 5' -54.2 NC_005264.1 + 97598 0.67 0.937554
Target:  5'- aCCGcuuCCuCGGCCGCgGCGGCUa---- -3'
miRNA:   3'- -GGUu--GGuGCCGGCGgCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 79552 0.67 0.937554
Target:  5'- gCCGcACCGCGGCaagGCCuuGCGGCCg---- -3'
miRNA:   3'- -GGU-UGGUGCCGg--CGG--CGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 105980 0.67 0.946742
Target:  5'- cCUAGCCAUGGCCcCCaggaGCAAUCUg--- -3'
miRNA:   3'- -GGUUGGUGCCGGcGG----CGUUGGAauuc -5'
24731 5' -54.2 NC_005264.1 + 66112 0.67 0.942267
Target:  5'- aUCAGCCGCGucugagaccCCGuCCGCAACCg---- -3'
miRNA:   3'- -GGUUGGUGCc--------GGC-GGCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 100615 0.67 0.942267
Target:  5'- aCGACCccgaaGCGGCCGCggagCGCGcCCUcAAGu -3'
miRNA:   3'- gGUUGG-----UGCCGGCG----GCGUuGGAaUUC- -5'
24731 5' -54.2 NC_005264.1 + 6256 0.67 0.946742
Target:  5'- cUCcgUCGCGGUCGUCGCcGCCgucggGAGg -3'
miRNA:   3'- -GGuuGGUGCCGGCGGCGuUGGaa---UUC- -5'
24731 5' -54.2 NC_005264.1 + 142964 0.67 0.946742
Target:  5'- gCUAG-CGCGGCCGCgGCggUCUcucgggcaUGAGg -3'
miRNA:   3'- -GGUUgGUGCCGGCGgCGuuGGA--------AUUC- -5'
24731 5' -54.2 NC_005264.1 + 27987 0.67 0.942267
Target:  5'- aCGACCGCcGuaGCCGCGGCCc---- -3'
miRNA:   3'- gGUUGGUGcCggCGGCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 6840 0.68 0.910396
Target:  5'- gCGACUAUGGCgccaGCgCGCAACCUc--- -3'
miRNA:   3'- gGUUGGUGCCGg---CG-GCGUUGGAauuc -5'
24731 5' -54.2 NC_005264.1 + 120811 0.68 0.908576
Target:  5'- -aGGCCGCGugcgcgucgacacuGCCGCCGUGGCCgacGAGc -3'
miRNA:   3'- ggUUGGUGC--------------CGGCGGCGUUGGaa-UUC- -5'
24731 5' -54.2 NC_005264.1 + 24668 0.68 0.910396
Target:  5'- gCCAcCUGCGGuucgaCCGCCGUAACCa---- -3'
miRNA:   3'- -GGUuGGUGCC-----GGCGGCGUUGGaauuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.