miRNA display CGI


Results 61 - 80 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24731 5' -54.2 NC_005264.1 + 124849 0.7 0.846905
Target:  5'- uCCGGCgGCGGUgGCCGCcacucGCCUg--- -3'
miRNA:   3'- -GGUUGgUGCCGgCGGCGu----UGGAauuc -5'
24731 5' -54.2 NC_005264.1 + 127567 0.7 0.822009
Target:  5'- -gGACCACGGCCGCgccCGC-GCCa---- -3'
miRNA:   3'- ggUUGGUGCCGGCG---GCGuUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 83421 0.7 0.813352
Target:  5'- aCCGcCCACGcuggguuCCGCCGCGGCCUc--- -3'
miRNA:   3'- -GGUuGGUGCc------GGCGGCGUUGGAauuc -5'
24731 5' -54.2 NC_005264.1 + 127250 0.7 0.822009
Target:  5'- gCGGCCAuCGGCCgaaGCCGCAGCa----- -3'
miRNA:   3'- gGUUGGU-GCCGG---CGGCGUUGgaauuc -5'
24731 5' -54.2 NC_005264.1 + 65320 0.7 0.830492
Target:  5'- gCCAcGCCACaGCCGCgGCAGCUc---- -3'
miRNA:   3'- -GGU-UGGUGcCGGCGgCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 31865 0.7 0.846905
Target:  5'- uCCAGCgccuCGCGGUCGgCGCAcGCCUUGu- -3'
miRNA:   3'- -GGUUG----GUGCCGGCgGCGU-UGGAAUuc -5'
24731 5' -54.2 NC_005264.1 + 7355 0.7 0.830492
Target:  5'- aCCGGCaaaaucugGCGGCCGCCGCggUUUUc-- -3'
miRNA:   3'- -GGUUGg-------UGCCGGCGGCGuuGGAAuuc -5'
24731 5' -54.2 NC_005264.1 + 35485 0.7 0.838793
Target:  5'- --uGCCGCGGCCGaUCGCGACggCUUGGu -3'
miRNA:   3'- gguUGGUGCCGGC-GGCGUUG--GAAUUc -5'
24731 5' -54.2 NC_005264.1 + 106021 0.7 0.830492
Target:  5'- gCUAGCUAgGGCCGCCGCGcAgCgcAGGa -3'
miRNA:   3'- -GGUUGGUgCCGGCGGCGU-UgGaaUUC- -5'
24731 5' -54.2 NC_005264.1 + 5823 0.7 0.846905
Target:  5'- uCCGGCgGCGGUgGCCGCcacucGCCUg--- -3'
miRNA:   3'- -GGUUGgUGCCGgCGGCGu----UGGAauuc -5'
24731 5' -54.2 NC_005264.1 + 128651 0.7 0.846905
Target:  5'- uCCAuGCCGCGGCUGCUguccaGCAGCUgUGAc -3'
miRNA:   3'- -GGU-UGGUGCCGGCGG-----CGUUGGaAUUc -5'
24731 5' -54.2 NC_005264.1 + 41334 0.7 0.846905
Target:  5'- gCCGACCAUcGUCGaaGCAGCCgcgAAGg -3'
miRNA:   3'- -GGUUGGUGcCGGCggCGUUGGaa-UUC- -5'
24731 5' -54.2 NC_005264.1 + 92177 0.7 0.838793
Target:  5'- gCCuGCCgGCGG-CGCCGCGGCCa---- -3'
miRNA:   3'- -GGuUGG-UGCCgGCGGCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 155480 0.7 0.830492
Target:  5'- -aAACCGCGGCgGCCGCcaGAUUUUGc- -3'
miRNA:   3'- ggUUGGUGCCGgCGGCG--UUGGAAUuc -5'
24731 5' -54.2 NC_005264.1 + 16472 0.7 0.830492
Target:  5'- uCCGACgACGcaGCCGCgGUGGCCUgcGGg -3'
miRNA:   3'- -GGUUGgUGC--CGGCGgCGUUGGAauUC- -5'
24731 5' -54.2 NC_005264.1 + 26563 0.7 0.846905
Target:  5'- gUAACgACGGCCGC-GCAACCc---- -3'
miRNA:   3'- gGUUGgUGCCGGCGgCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 107651 0.7 0.846905
Target:  5'- gCCGACguuuCGCGGUCGCCGCcuucAGCCg---- -3'
miRNA:   3'- -GGUUG----GUGCCGGCGGCG----UUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 116297 0.7 0.830492
Target:  5'- gCGGCUACGGCUGUgGCcuucgacgggAACUUUGAGg -3'
miRNA:   3'- gGUUGGUGCCGGCGgCG----------UUGGAAUUC- -5'
24731 5' -54.2 NC_005264.1 + 87620 0.7 0.837971
Target:  5'- aCGGCCGCcgcgcagGGCCGauGCAGCCgcgUGGGg -3'
miRNA:   3'- gGUUGGUG-------CCGGCggCGUUGGa--AUUC- -5'
24731 5' -54.2 NC_005264.1 + 8223 0.7 0.822009
Target:  5'- gCGGCCAuCGGCCgaaGCCGCAGCa----- -3'
miRNA:   3'- gGUUGGU-GCCGG---CGGCGUUGgaauuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.