miRNA display CGI


Results 81 - 100 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24731 5' -54.2 NC_005264.1 + 7355 0.7 0.830492
Target:  5'- aCCGGCaaaaucugGCGGCCGCCGCggUUUUc-- -3'
miRNA:   3'- -GGUUGg-------UGCCGGCGGCGuuGGAAuuc -5'
24731 5' -54.2 NC_005264.1 + 65320 0.7 0.830492
Target:  5'- gCCAcGCCACaGCCGCgGCAGCUc---- -3'
miRNA:   3'- -GGU-UGGUGcCGGCGgCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 102839 0.69 0.884401
Target:  5'- -gGGCCGCGGCCa-CGCGGCCg---- -3'
miRNA:   3'- ggUUGGUGCCGGcgGCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 34878 0.69 0.854822
Target:  5'- gCUAACCGguuccaGGCCGCCGCcuUCUUcGAGg -3'
miRNA:   3'- -GGUUGGUg-----CCGGCGGCGuuGGAA-UUC- -5'
24731 5' -54.2 NC_005264.1 + 47211 0.69 0.854822
Target:  5'- -gGGCCACGGCCGUCGaUGGCUggucgGAGc -3'
miRNA:   3'- ggUUGGUGCCGGCGGC-GUUGGaa---UUC- -5'
24731 5' -54.2 NC_005264.1 + 45800 0.69 0.884401
Target:  5'- gCggUCugGGCCGCCGC-GCUg---- -3'
miRNA:   3'- gGuuGGugCCGGCGGCGuUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 69348 0.69 0.891246
Target:  5'- aCGACgCGCcGGCCGCCaGCAgcGCCUc--- -3'
miRNA:   3'- gGUUG-GUG-CCGGCGG-CGU--UGGAauuc -5'
24731 5' -54.2 NC_005264.1 + 42612 0.69 0.884401
Target:  5'- gCAGCCAUGGCCGCgGaCGcCCg---- -3'
miRNA:   3'- gGUUGGUGCCGGCGgC-GUuGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 153498 0.69 0.87733
Target:  5'- gCCGGCaaaACGGCgGCCGCc-CCUggcgGGGa -3'
miRNA:   3'- -GGUUGg--UGCCGgCGGCGuuGGAa---UUC- -5'
24731 5' -54.2 NC_005264.1 + 12020 0.69 0.87733
Target:  5'- gCGGCgGCGaCCGCCGC--CCUUAGGc -3'
miRNA:   3'- gGUUGgUGCcGGCGGCGuuGGAAUUC- -5'
24731 5' -54.2 NC_005264.1 + 112348 0.69 0.87733
Target:  5'- aCUGGCCGCGGCCGUgGCcacguCCUc--- -3'
miRNA:   3'- -GGUUGGUGCCGGCGgCGuu---GGAauuc -5'
24731 5' -54.2 NC_005264.1 + 69053 0.69 0.891246
Target:  5'- -uGGCCGCGGCCGCCG-GGCa----- -3'
miRNA:   3'- ggUUGGUGCCGGCGGCgUUGgaauuc -5'
24731 5' -54.2 NC_005264.1 + 145480 0.69 0.87004
Target:  5'- -aGACCGC-GCCGCCGCcagcuGCCgcggAAGg -3'
miRNA:   3'- ggUUGGUGcCGGCGGCGu----UGGaa--UUC- -5'
24731 5' -54.2 NC_005264.1 + 88342 0.69 0.862536
Target:  5'- aUCAGCC-UGGCCGCCuuuggcgcucucGCAACCa---- -3'
miRNA:   3'- -GGUUGGuGCCGGCGG------------CGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 132487 0.69 0.862536
Target:  5'- gCAGCCACguGGCCGCaggGCAGCUg---- -3'
miRNA:   3'- gGUUGGUG--CCGGCGg--CGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 84208 0.69 0.857932
Target:  5'- gCC-GCCGCGGCgguuaacagaagaggCGCCGCGAgCUUGc- -3'
miRNA:   3'- -GGuUGGUGCCG---------------GCGGCGUUgGAAUuc -5'
24731 5' -54.2 NC_005264.1 + 52269 0.69 0.857932
Target:  5'- cCCGGCCACGGCaucuacaaugcgguaCG-CGCGACCUc--- -3'
miRNA:   3'- -GGUUGGUGCCG---------------GCgGCGUUGGAauuc -5'
24731 5' -54.2 NC_005264.1 + 75952 0.69 0.854822
Target:  5'- cUCuAUCGCGGCCGCCGC--CUgUGAGg -3'
miRNA:   3'- -GGuUGGUGCCGGCGGCGuuGGaAUUC- -5'
24731 5' -54.2 NC_005264.1 + 66748 0.69 0.854822
Target:  5'- -aAACCGCGGCaacaguaGCCGCAACg----- -3'
miRNA:   3'- ggUUGGUGCCGg------CGGCGUUGgaauuc -5'
24731 5' -54.2 NC_005264.1 + 41094 0.69 0.87733
Target:  5'- aCgGGCC-CGGCCGCgGgCGGCCUa--- -3'
miRNA:   3'- -GgUUGGuGCCGGCGgC-GUUGGAauuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.