miRNA display CGI


Results 41 - 60 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24731 5' -54.2 NC_005264.1 + 128845 0.72 0.748611
Target:  5'- gCCGGCUACaugGGCCGCCGCAcguUCgcGAGa -3'
miRNA:   3'- -GGUUGGUG---CCGGCGGCGUu--GGaaUUC- -5'
24731 5' -54.2 NC_005264.1 + 9340 0.72 0.748611
Target:  5'- gCCAGggGCGGCCGCCGUuuuGCCg---- -3'
miRNA:   3'- -GGUUggUGCCGGCGGCGu--UGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 49804 0.72 0.748611
Target:  5'- --cGCCGCGGCCcaGUCGCGGCCg---- -3'
miRNA:   3'- gguUGGUGCCGG--CGGCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 9819 0.72 0.748611
Target:  5'- gCCGGCUACaugGGCCGCCGCAcguUCgcGAGa -3'
miRNA:   3'- -GGUUGGUG---CCGGCGGCGUu--GGaaUUC- -5'
24731 5' -54.2 NC_005264.1 + 17686 0.71 0.767761
Target:  5'- gCAGCCGaGGCCGCgGCGGCUcgugucgggugUUAGGg -3'
miRNA:   3'- gGUUGGUgCCGGCGgCGUUGG-----------AAUUC- -5'
24731 5' -54.2 NC_005264.1 + 30429 0.71 0.777158
Target:  5'- aCAGCCGCGGCUuguagcucguGCCuGCGGCCa---- -3'
miRNA:   3'- gGUUGGUGCCGG----------CGG-CGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 35003 0.71 0.786425
Target:  5'- -aGACCGcCGGCCGCCGCGgaggcaacGCUgucggGAGa -3'
miRNA:   3'- ggUUGGU-GCCGGCGGCGU--------UGGaa---UUC- -5'
24731 5' -54.2 NC_005264.1 + 30542 0.71 0.786425
Target:  5'- gCCGACCGCGG-UGUCGCGAUCa---- -3'
miRNA:   3'- -GGUUGGUGCCgGCGGCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 3866 0.71 0.795552
Target:  5'- gCAGCCGaGGUCGCCGUGGCCc---- -3'
miRNA:   3'- gGUUGGUgCCGGCGGCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 69765 0.71 0.795552
Target:  5'- -aAGCCGaGGUCGCCGCGGCCc---- -3'
miRNA:   3'- ggUUGGUgCCGGCGGCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 65752 0.71 0.795552
Target:  5'- uCC-GCCGuCGGCCGgCGCAcCCUUAu- -3'
miRNA:   3'- -GGuUGGU-GCCGGCgGCGUuGGAAUuc -5'
24731 5' -54.2 NC_005264.1 + 125912 0.71 0.795552
Target:  5'- -gAACCGCGGcCCGCUGgAGCCa---- -3'
miRNA:   3'- ggUUGGUGCC-GGCGGCgUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 21752 0.71 0.795552
Target:  5'- uUCGGCgGCGGCCgucuugagcGCCGUAACUUUGGc -3'
miRNA:   3'- -GGUUGgUGCCGG---------CGGCGUUGGAAUUc -5'
24731 5' -54.2 NC_005264.1 + 70943 0.71 0.795552
Target:  5'- cCCGcCCAUcGCUGCCGCGGCCa---- -3'
miRNA:   3'- -GGUuGGUGcCGGCGGCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 122892 0.71 0.795552
Target:  5'- gCAGCCGaGGUCGCCGUGGCCc---- -3'
miRNA:   3'- gGUUGGUgCCGGCGGCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 13419 0.71 0.804531
Target:  5'- aCCGGCgCGCGaCCGCCGCcGCCg---- -3'
miRNA:   3'- -GGUUG-GUGCcGGCGGCGuUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 27517 0.71 0.804531
Target:  5'- gCGGgCugGGUCGCCGUAACCc---- -3'
miRNA:   3'- gGUUgGugCCGGCGGCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 132446 0.71 0.804531
Target:  5'- aCCGGCgCGCGaCCGCCGCcGCCg---- -3'
miRNA:   3'- -GGUUG-GUGCcGGCGGCGuUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 110149 0.71 0.804531
Target:  5'- gCgGGCgGCGaaacCCGCCGCGGCUUUGGGg -3'
miRNA:   3'- -GgUUGgUGCc---GGCGGCGUUGGAAUUC- -5'
24731 5' -54.2 NC_005264.1 + 83421 0.7 0.813352
Target:  5'- aCCGcCCACGcuggguuCCGCCGCGGCCUc--- -3'
miRNA:   3'- -GGUuGGUGCc------GGCGGCGUUGGAauuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.