Results 41 - 60 of 258 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24731 | 5' | -54.2 | NC_005264.1 | + | 128845 | 0.72 | 0.748611 |
Target: 5'- gCCGGCUACaugGGCCGCCGCAcguUCgcGAGa -3' miRNA: 3'- -GGUUGGUG---CCGGCGGCGUu--GGaaUUC- -5' |
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24731 | 5' | -54.2 | NC_005264.1 | + | 9340 | 0.72 | 0.748611 |
Target: 5'- gCCAGggGCGGCCGCCGUuuuGCCg---- -3' miRNA: 3'- -GGUUggUGCCGGCGGCGu--UGGaauuc -5' |
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24731 | 5' | -54.2 | NC_005264.1 | + | 49804 | 0.72 | 0.748611 |
Target: 5'- --cGCCGCGGCCcaGUCGCGGCCg---- -3' miRNA: 3'- gguUGGUGCCGG--CGGCGUUGGaauuc -5' |
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24731 | 5' | -54.2 | NC_005264.1 | + | 9819 | 0.72 | 0.748611 |
Target: 5'- gCCGGCUACaugGGCCGCCGCAcguUCgcGAGa -3' miRNA: 3'- -GGUUGGUG---CCGGCGGCGUu--GGaaUUC- -5' |
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24731 | 5' | -54.2 | NC_005264.1 | + | 17686 | 0.71 | 0.767761 |
Target: 5'- gCAGCCGaGGCCGCgGCGGCUcgugucgggugUUAGGg -3' miRNA: 3'- gGUUGGUgCCGGCGgCGUUGG-----------AAUUC- -5' |
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24731 | 5' | -54.2 | NC_005264.1 | + | 30429 | 0.71 | 0.777158 |
Target: 5'- aCAGCCGCGGCUuguagcucguGCCuGCGGCCa---- -3' miRNA: 3'- gGUUGGUGCCGG----------CGG-CGUUGGaauuc -5' |
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24731 | 5' | -54.2 | NC_005264.1 | + | 35003 | 0.71 | 0.786425 |
Target: 5'- -aGACCGcCGGCCGCCGCGgaggcaacGCUgucggGAGa -3' miRNA: 3'- ggUUGGU-GCCGGCGGCGU--------UGGaa---UUC- -5' |
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24731 | 5' | -54.2 | NC_005264.1 | + | 30542 | 0.71 | 0.786425 |
Target: 5'- gCCGACCGCGG-UGUCGCGAUCa---- -3' miRNA: 3'- -GGUUGGUGCCgGCGGCGUUGGaauuc -5' |
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24731 | 5' | -54.2 | NC_005264.1 | + | 3866 | 0.71 | 0.795552 |
Target: 5'- gCAGCCGaGGUCGCCGUGGCCc---- -3' miRNA: 3'- gGUUGGUgCCGGCGGCGUUGGaauuc -5' |
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24731 | 5' | -54.2 | NC_005264.1 | + | 69765 | 0.71 | 0.795552 |
Target: 5'- -aAGCCGaGGUCGCCGCGGCCc---- -3' miRNA: 3'- ggUUGGUgCCGGCGGCGUUGGaauuc -5' |
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24731 | 5' | -54.2 | NC_005264.1 | + | 65752 | 0.71 | 0.795552 |
Target: 5'- uCC-GCCGuCGGCCGgCGCAcCCUUAu- -3' miRNA: 3'- -GGuUGGU-GCCGGCgGCGUuGGAAUuc -5' |
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24731 | 5' | -54.2 | NC_005264.1 | + | 125912 | 0.71 | 0.795552 |
Target: 5'- -gAACCGCGGcCCGCUGgAGCCa---- -3' miRNA: 3'- ggUUGGUGCC-GGCGGCgUUGGaauuc -5' |
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24731 | 5' | -54.2 | NC_005264.1 | + | 21752 | 0.71 | 0.795552 |
Target: 5'- uUCGGCgGCGGCCgucuugagcGCCGUAACUUUGGc -3' miRNA: 3'- -GGUUGgUGCCGG---------CGGCGUUGGAAUUc -5' |
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24731 | 5' | -54.2 | NC_005264.1 | + | 70943 | 0.71 | 0.795552 |
Target: 5'- cCCGcCCAUcGCUGCCGCGGCCa---- -3' miRNA: 3'- -GGUuGGUGcCGGCGGCGUUGGaauuc -5' |
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24731 | 5' | -54.2 | NC_005264.1 | + | 122892 | 0.71 | 0.795552 |
Target: 5'- gCAGCCGaGGUCGCCGUGGCCc---- -3' miRNA: 3'- gGUUGGUgCCGGCGGCGUUGGaauuc -5' |
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24731 | 5' | -54.2 | NC_005264.1 | + | 13419 | 0.71 | 0.804531 |
Target: 5'- aCCGGCgCGCGaCCGCCGCcGCCg---- -3' miRNA: 3'- -GGUUG-GUGCcGGCGGCGuUGGaauuc -5' |
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24731 | 5' | -54.2 | NC_005264.1 | + | 27517 | 0.71 | 0.804531 |
Target: 5'- gCGGgCugGGUCGCCGUAACCc---- -3' miRNA: 3'- gGUUgGugCCGGCGGCGUUGGaauuc -5' |
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24731 | 5' | -54.2 | NC_005264.1 | + | 132446 | 0.71 | 0.804531 |
Target: 5'- aCCGGCgCGCGaCCGCCGCcGCCg---- -3' miRNA: 3'- -GGUUG-GUGCcGGCGGCGuUGGaauuc -5' |
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24731 | 5' | -54.2 | NC_005264.1 | + | 110149 | 0.71 | 0.804531 |
Target: 5'- gCgGGCgGCGaaacCCGCCGCGGCUUUGGGg -3' miRNA: 3'- -GgUUGgUGCc---GGCGGCGUUGGAAUUC- -5' |
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24731 | 5' | -54.2 | NC_005264.1 | + | 83421 | 0.7 | 0.813352 |
Target: 5'- aCCGcCCACGcuggguuCCGCCGCGGCCUc--- -3' miRNA: 3'- -GGUuGGUGCc------GGCGGCGUUGGAauuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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