miRNA display CGI


Results 101 - 120 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24731 5' -54.2 NC_005264.1 + 41094 0.69 0.87733
Target:  5'- aCgGGCC-CGGCCGCgGgCGGCCUa--- -3'
miRNA:   3'- -GgUUGGuGCCGGCGgC-GUUGGAauuc -5'
24731 5' -54.2 NC_005264.1 + 12020 0.69 0.87733
Target:  5'- gCGGCgGCGaCCGCCGC--CCUUAGGc -3'
miRNA:   3'- gGUUGgUGCcGGCGGCGuuGGAAUUC- -5'
24731 5' -54.2 NC_005264.1 + 153498 0.69 0.87733
Target:  5'- gCCGGCaaaACGGCgGCCGCc-CCUggcgGGGa -3'
miRNA:   3'- -GGUUGg--UGCCGgCGGCGuuGGAa---UUC- -5'
24731 5' -54.2 NC_005264.1 + 102839 0.69 0.884401
Target:  5'- -gGGCCGCGGCCa-CGCGGCCg---- -3'
miRNA:   3'- ggUUGGUGCCGGcgGCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 64142 0.69 0.884401
Target:  5'- gCUcGCCACGG-CGCCGCGAUCc---- -3'
miRNA:   3'- -GGuUGGUGCCgGCGGCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 161639 0.69 0.884401
Target:  5'- gCAGCCAUGGCCGCgGaCGcCCg---- -3'
miRNA:   3'- gGUUGGUGCCGGCGgC-GUuGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 45800 0.69 0.884401
Target:  5'- gCggUCugGGCCGCCGC-GCUg---- -3'
miRNA:   3'- gGuuGGugCCGGCGGCGuUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 42612 0.69 0.884401
Target:  5'- gCAGCCAUGGCCGCgGaCGcCCg---- -3'
miRNA:   3'- gGUUGGUGCCGGCGgC-GUuGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 65156 0.69 0.887166
Target:  5'- aCCAacACCGCggcggcgcccucucuGGCCaugGCCGCGGCCUUu-- -3'
miRNA:   3'- -GGU--UGGUG---------------CCGG---CGGCGUUGGAAuuc -5'
24731 5' -54.2 NC_005264.1 + 105264 0.69 0.891246
Target:  5'- -gAGCCAUGGCCaugaaaCCGCucugcgaaAACCUUGGGg -3'
miRNA:   3'- ggUUGGUGCCGGc-----GGCG--------UUGGAAUUC- -5'
24731 5' -54.2 NC_005264.1 + 69053 0.69 0.891246
Target:  5'- -uGGCCGCGGCCGCCG-GGCa----- -3'
miRNA:   3'- ggUUGGUGCCGGCGGCgUUGgaauuc -5'
24731 5' -54.2 NC_005264.1 + 69348 0.69 0.891246
Target:  5'- aCGACgCGCcGGCCGCCaGCAgcGCCUc--- -3'
miRNA:   3'- gGUUG-GUG-CCGGCGG-CGU--UGGAauuc -5'
24731 5' -54.2 NC_005264.1 + 85373 0.68 0.897211
Target:  5'- cCCAGCC-CGaGCCGCuguguacCGCGACCa---- -3'
miRNA:   3'- -GGUUGGuGC-CGGCG-------GCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 67480 0.68 0.897862
Target:  5'- cCCGagGCCG-GGCCGCCGCcccGCCg---- -3'
miRNA:   3'- -GGU--UGGUgCCGGCGGCGu--UGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 156744 0.68 0.897862
Target:  5'- aCAGaCAUGGCCGCCGUAAUg--AAGg -3'
miRNA:   3'- gGUUgGUGCCGGCGGCGUUGgaaUUC- -5'
24731 5' -54.2 NC_005264.1 + 83620 0.68 0.897862
Target:  5'- cCCcGCCGCcGCCuGCaCGCAGCCUa--- -3'
miRNA:   3'- -GGuUGGUGcCGG-CG-GCGUUGGAauuc -5'
24731 5' -54.2 NC_005264.1 + 114108 0.68 0.904247
Target:  5'- uCgGGCCAguCGGCCcuGCCGCGaauaACCUcGAGg -3'
miRNA:   3'- -GgUUGGU--GCCGG--CGGCGU----UGGAaUUC- -5'
24731 5' -54.2 NC_005264.1 + 149525 0.68 0.904247
Target:  5'- uUAGCCAgGcgucGCCGUCGUAACCagGAGg -3'
miRNA:   3'- gGUUGGUgC----CGGCGGCGUUGGaaUUC- -5'
24731 5' -54.2 NC_005264.1 + 145952 0.68 0.904247
Target:  5'- aCCGACgACGGCgacauaucguuUGCCGCcGCCgacAAGg -3'
miRNA:   3'- -GGUUGgUGCCG-----------GCGGCGuUGGaa-UUC- -5'
24731 5' -54.2 NC_005264.1 + 120811 0.68 0.908576
Target:  5'- -aGGCCGCGugcgcgucgacacuGCCGCCGUGGCCgacGAGc -3'
miRNA:   3'- ggUUGGUGC--------------CGGCGGCGUUGGaa-UUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.