Results 61 - 80 of 258 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24731 | 5' | -54.2 | NC_005264.1 | + | 88384 | 0.66 | 0.950982 |
Target: 5'- ---uUCACGGCCaGCCGCAugCc---- -3' miRNA: 3'- gguuGGUGCCGG-CGGCGUugGaauuc -5' |
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24731 | 5' | -54.2 | NC_005264.1 | + | 140255 | 0.66 | 0.950982 |
Target: 5'- cUCGGCgACGGUgaCGCCGCuuCCagGGGg -3' miRNA: 3'- -GGUUGgUGCCG--GCGGCGuuGGaaUUC- -5' |
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24731 | 5' | -54.2 | NC_005264.1 | + | 40634 | 0.66 | 0.950982 |
Target: 5'- cCCuuCCcCGcGCCGUCGCGACgCggAGGg -3' miRNA: 3'- -GGuuGGuGC-CGGCGGCGUUG-GaaUUC- -5' |
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24731 | 5' | -54.2 | NC_005264.1 | + | 34114 | 0.66 | 0.950982 |
Target: 5'- -uGACCAUGGCCuUCGCuGCCUcuGGu -3' miRNA: 3'- ggUUGGUGCCGGcGGCGuUGGAauUC- -5' |
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24731 | 5' | -54.2 | NC_005264.1 | + | 20021 | 0.66 | 0.950982 |
Target: 5'- gUCuACCACGGCgCGCuCGCAcCCg---- -3' miRNA: 3'- -GGuUGGUGCCG-GCG-GCGUuGGaauuc -5' |
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24731 | 5' | -54.2 | NC_005264.1 | + | 154068 | 0.66 | 0.950982 |
Target: 5'- aCAACCGC-GCCGCCGUAgagGCUc---- -3' miRNA: 3'- gGUUGGUGcCGGCGGCGU---UGGaauuc -5' |
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24731 | 5' | -54.2 | NC_005264.1 | + | 162815 | 0.66 | 0.950982 |
Target: 5'- aCAGCUAgGGCCGCgGCGuuauggcguGCCg---- -3' miRNA: 3'- gGUUGGUgCCGGCGgCGU---------UGGaauuc -5' |
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24731 | 5' | -54.2 | NC_005264.1 | + | 22050 | 0.66 | 0.950982 |
Target: 5'- aCCGacGCCuuggACGGUagCGCCGCcGCCggAAGg -3' miRNA: 3'- -GGU--UGG----UGCCG--GCGGCGuUGGaaUUC- -5' |
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24731 | 5' | -54.2 | NC_005264.1 | + | 6256 | 0.67 | 0.946742 |
Target: 5'- cUCcgUCGCGGUCGUCGCcGCCgucggGAGg -3' miRNA: 3'- -GGuuGGUGCCGGCGGCGuUGGaa---UUC- -5' |
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24731 | 5' | -54.2 | NC_005264.1 | + | 142964 | 0.67 | 0.946742 |
Target: 5'- gCUAG-CGCGGCCGCgGCggUCUcucgggcaUGAGg -3' miRNA: 3'- -GGUUgGUGCCGGCGgCGuuGGA--------AUUC- -5' |
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24731 | 5' | -54.2 | NC_005264.1 | + | 105980 | 0.67 | 0.946742 |
Target: 5'- cCUAGCCAUGGCCcCCaggaGCAAUCUg--- -3' miRNA: 3'- -GGUUGGUGCCGGcGG----CGUUGGAauuc -5' |
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24731 | 5' | -54.2 | NC_005264.1 | + | 64406 | 0.67 | 0.946742 |
Target: 5'- cCCGGCCAaGGCCgacGCCGCGGgCa---- -3' miRNA: 3'- -GGUUGGUgCCGG---CGGCGUUgGaauuc -5' |
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24731 | 5' | -54.2 | NC_005264.1 | + | 109721 | 0.67 | 0.946742 |
Target: 5'- cCCGGCCuccuCGGCCcccucGCCGagcGCCUUGu- -3' miRNA: 3'- -GGUUGGu---GCCGG-----CGGCgu-UGGAAUuc -5' |
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24731 | 5' | -54.2 | NC_005264.1 | + | 125283 | 0.67 | 0.946742 |
Target: 5'- cUCcgUCGCGGUCGUCGCcGCCgucggGAGg -3' miRNA: 3'- -GGuuGGUGCCGGCGGCGuUGGaa---UUC- -5' |
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24731 | 5' | -54.2 | NC_005264.1 | + | 134922 | 0.67 | 0.942267 |
Target: 5'- gCCAacACCGCGGUCGUCGUcGCUc---- -3' miRNA: 3'- -GGU--UGGUGCCGGCGGCGuUGGaauuc -5' |
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24731 | 5' | -54.2 | NC_005264.1 | + | 66112 | 0.67 | 0.942267 |
Target: 5'- aUCAGCCGCGucugagaccCCGuCCGCAACCg---- -3' miRNA: 3'- -GGUUGGUGCc--------GGC-GGCGUUGGaauuc -5' |
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24731 | 5' | -54.2 | NC_005264.1 | + | 27987 | 0.67 | 0.942267 |
Target: 5'- aCGACCGCcGuaGCCGCGGCCc---- -3' miRNA: 3'- gGUUGGUGcCggCGGCGUUGGaauuc -5' |
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24731 | 5' | -54.2 | NC_005264.1 | + | 17039 | 0.67 | 0.942267 |
Target: 5'- gCCAGCagCGCGGCCGCUaagaGCAuGCCg---- -3' miRNA: 3'- -GGUUG--GUGCCGGCGG----CGU-UGGaauuc -5' |
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24731 | 5' | -54.2 | NC_005264.1 | + | 149420 | 0.67 | 0.942267 |
Target: 5'- cUCGGCgGCGGCgGUCGCGcGCCggugcgGAGa -3' miRNA: 3'- -GGUUGgUGCCGgCGGCGU-UGGaa----UUC- -5' |
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24731 | 5' | -54.2 | NC_005264.1 | + | 154493 | 0.67 | 0.942267 |
Target: 5'- aUCAGCgACGGUCGCCcccucaAACCcUAGGg -3' miRNA: 3'- -GGUUGgUGCCGGCGGcg----UUGGaAUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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