miRNA display CGI


Results 81 - 100 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24731 5' -54.2 NC_005264.1 + 100615 0.67 0.942267
Target:  5'- aCGACCccgaaGCGGCCGCggagCGCGcCCUcAAGu -3'
miRNA:   3'- gGUUGG-----UGCCGGCG----GCGUuGGAaUUC- -5'
24731 5' -54.2 NC_005264.1 + 30393 0.67 0.942267
Target:  5'- cUCGGCgGCGGCgGUCGCGcGCCggugcgGAGa -3'
miRNA:   3'- -GGUUGgUGCCGgCGGCGU-UGGaa----UUC- -5'
24731 5' -54.2 NC_005264.1 + 154493 0.67 0.942267
Target:  5'- aUCAGCgACGGUCGCCcccucaAACCcUAGGg -3'
miRNA:   3'- -GGUUGgUGCCGGCGGcg----UUGGaAUUC- -5'
24731 5' -54.2 NC_005264.1 + 149420 0.67 0.942267
Target:  5'- cUCGGCgGCGGCgGUCGCGcGCCggugcgGAGa -3'
miRNA:   3'- -GGUUGgUGCCGgCGGCGU-UGGaa----UUC- -5'
24731 5' -54.2 NC_005264.1 + 82955 0.67 0.942267
Target:  5'- gCCuGCgACGGUCGCCGCcgcGCCc---- -3'
miRNA:   3'- -GGuUGgUGCCGGCGGCGu--UGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 134922 0.67 0.942267
Target:  5'- gCCAacACCGCGGUCGUCGUcGCUc---- -3'
miRNA:   3'- -GGU--UGGUGCCGGCGGCGuUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 156612 0.67 0.937554
Target:  5'- gCAAgucUCGCGGCgGCCGCGGCgg-GGGg -3'
miRNA:   3'- gGUU---GGUGCCGgCGGCGUUGgaaUUC- -5'
24731 5' -54.2 NC_005264.1 + 5145 0.67 0.937554
Target:  5'- uCgAugCGCGGCCgcGCCGCAucguccgaaGCCUauucgGAGg -3'
miRNA:   3'- -GgUugGUGCCGG--CGGCGU---------UGGAa----UUC- -5'
24731 5' -54.2 NC_005264.1 + 24249 0.67 0.937554
Target:  5'- cCCcACCGCuGCCGCgGaaguCAACCUUAGu -3'
miRNA:   3'- -GGuUGGUGcCGGCGgC----GUUGGAAUUc -5'
24731 5' -54.2 NC_005264.1 + 123160 0.67 0.937554
Target:  5'- gCCAAaCACGGCCGCuuguCGCGAUgCUUGc- -3'
miRNA:   3'- -GGUUgGUGCCGGCG----GCGUUG-GAAUuc -5'
24731 5' -54.2 NC_005264.1 + 97598 0.67 0.937554
Target:  5'- aCCGcuuCCuCGGCCGCgGCGGCUa---- -3'
miRNA:   3'- -GGUu--GGuGCCGGCGgCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 79552 0.67 0.937554
Target:  5'- gCCGcACCGCGGCaagGCCuuGCGGCCg---- -3'
miRNA:   3'- -GGU-UGGUGCCGg--CGG--CGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 51432 0.67 0.937554
Target:  5'- uCCGGCa--GGCCGCCcuccaCGACCUUGu- -3'
miRNA:   3'- -GGUUGgugCCGGCGGc----GUUGGAAUuc -5'
24731 5' -54.2 NC_005264.1 + 4133 0.67 0.937554
Target:  5'- gCCAAaCACGGCCGCuuguCGCGAUgCUUGc- -3'
miRNA:   3'- -GGUUgGUGCCGGCG----GCGUUG-GAAUuc -5'
24731 5' -54.2 NC_005264.1 + 47109 0.67 0.937554
Target:  5'- aCAAcCCGCGGaUgGCCGUAauGCUUUGGGg -3'
miRNA:   3'- gGUU-GGUGCC-GgCGGCGU--UGGAAUUC- -5'
24731 5' -54.2 NC_005264.1 + 37585 0.67 0.937554
Target:  5'- gCAAgucUCGCGGCgGCCGCGGCgg-GGGg -3'
miRNA:   3'- gGUU---GGUGCCGgCGGCGUUGgaaUUC- -5'
24731 5' -54.2 NC_005264.1 + 102230 0.67 0.937554
Target:  5'- gCGAgC-CGGCUGCCGCGGCauacGAGa -3'
miRNA:   3'- gGUUgGuGCCGGCGGCGUUGgaa-UUC- -5'
24731 5' -54.2 NC_005264.1 + 60004 0.67 0.932603
Target:  5'- aCGGCCGC-GUgGCCGCGGCCc-AAGa -3'
miRNA:   3'- gGUUGGUGcCGgCGGCGUUGGaaUUC- -5'
24731 5' -54.2 NC_005264.1 + 56228 0.67 0.932603
Target:  5'- aCCGuccuUCACGuaCGCCGCGACCc---- -3'
miRNA:   3'- -GGUu---GGUGCcgGCGGCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 30362 0.67 0.932603
Target:  5'- gCGGCCACguGGCUGCCGUAAUUc---- -3'
miRNA:   3'- gGUUGGUG--CCGGCGGCGUUGGaauuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.