miRNA display CGI


Results 121 - 140 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24731 5' -54.2 NC_005264.1 + 69971 0.68 0.916307
Target:  5'- aCGcuACCuuGGCgGCUGCGuCCUUGAGc -3'
miRNA:   3'- gGU--UGGugCCGgCGGCGUuGGAAUUC- -5'
24731 5' -54.2 NC_005264.1 + 7986 0.68 0.916307
Target:  5'- uCCGugCACgGGCCGCCauuGCGggGCCggcaGAGg -3'
miRNA:   3'- -GGUugGUG-CCGGCGG---CGU--UGGaa--UUC- -5'
24731 5' -54.2 NC_005264.1 + 62759 0.68 0.916307
Target:  5'- ---cCCGCGGCCGCCauGCuacGCCcUAGGc -3'
miRNA:   3'- gguuGGUGCCGGCGG--CGu--UGGaAUUC- -5'
24731 5' -54.2 NC_005264.1 + 97671 0.68 0.916307
Target:  5'- gCGGCCAUGGCCagagagggcgccGCCGCggUgUUGGu -3'
miRNA:   3'- gGUUGGUGCCGG------------CGGCGuuGgAAUUc -5'
24731 5' -54.2 NC_005264.1 + 127013 0.68 0.916307
Target:  5'- uCCGugCACgGGCCGCCauuGCGggGCCggcaGAGg -3'
miRNA:   3'- -GGUugGUG-CCGGCGG---CGU--UGGaa--UUC- -5'
24731 5' -54.2 NC_005264.1 + 39357 0.68 0.916307
Target:  5'- gCAACCgcGCGGCCaCCGCAugCc---- -3'
miRNA:   3'- gGUUGG--UGCCGGcGGCGUugGaauuc -5'
24731 5' -54.2 NC_005264.1 + 92975 0.68 0.915726
Target:  5'- gCCAggggaucACCACGcGCCGCagcaCGCGGCCguagcgGGGg -3'
miRNA:   3'- -GGU-------UGGUGC-CGGCG----GCGUUGGaa----UUC- -5'
24731 5' -54.2 NC_005264.1 + 19527 0.68 0.910396
Target:  5'- -aAGCUcgggACGGCCGCCGcCAACgUUGc- -3'
miRNA:   3'- ggUUGG----UGCCGGCGGC-GUUGgAAUuc -5'
24731 5' -54.2 NC_005264.1 + 30610 0.68 0.910396
Target:  5'- cCCGGCgACGGCgGCgGCGACg----- -3'
miRNA:   3'- -GGUUGgUGCCGgCGgCGUUGgaauuc -5'
24731 5' -54.2 NC_005264.1 + 156581 0.68 0.910396
Target:  5'- cCCGACgGCGGCgaCGaCCGCGACg--GAGg -3'
miRNA:   3'- -GGUUGgUGCCG--GC-GGCGUUGgaaUUC- -5'
24731 5' -54.2 NC_005264.1 + 37554 0.68 0.910396
Target:  5'- cCCGACgGCGGCgaCGaCCGCGACg--GAGg -3'
miRNA:   3'- -GGUUGgUGCCG--GC-GGCGUUGgaaUUC- -5'
24731 5' -54.2 NC_005264.1 + 87252 0.68 0.910396
Target:  5'- gCCGACUACGGCUG-CGCAaAUCUUu-- -3'
miRNA:   3'- -GGUUGGUGCCGGCgGCGU-UGGAAuuc -5'
24731 5' -54.2 NC_005264.1 + 68432 0.68 0.910396
Target:  5'- -gGACUAcCGG-CGCCGCGGCCUg--- -3'
miRNA:   3'- ggUUGGU-GCCgGCGGCGUUGGAauuc -5'
24731 5' -54.2 NC_005264.1 + 16611 0.68 0.910396
Target:  5'- uCCGggcGCCACGacGCCGCgGCGauuaucAUCUUAGGg -3'
miRNA:   3'- -GGU---UGGUGC--CGGCGgCGU------UGGAAUUC- -5'
24731 5' -54.2 NC_005264.1 + 24668 0.68 0.910396
Target:  5'- gCCAcCUGCGGuucgaCCGCCGUAACCa---- -3'
miRNA:   3'- -GGUuGGUGCC-----GGCGGCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 6840 0.68 0.910396
Target:  5'- gCGACUAUGGCgccaGCgCGCAACCUc--- -3'
miRNA:   3'- gGUUGGUGCCGg---CG-GCGUUGGAauuc -5'
24731 5' -54.2 NC_005264.1 + 125866 0.68 0.910396
Target:  5'- gCGACUAUGGCgccaGCgCGCAACCUc--- -3'
miRNA:   3'- gGUUGGUGCCGg---CG-GCGUUGGAauuc -5'
24731 5' -54.2 NC_005264.1 + 149637 0.68 0.910396
Target:  5'- cCCGGCgACGGCgGCgGCGACg----- -3'
miRNA:   3'- -GGUUGgUGCCGgCGgCGUUGgaauuc -5'
24731 5' -54.2 NC_005264.1 + 120811 0.68 0.908576
Target:  5'- -aGGCCGCGugcgcgucgacacuGCCGCCGUGGCCgacGAGc -3'
miRNA:   3'- ggUUGGUGC--------------CGGCGGCGUUGGaa-UUC- -5'
24731 5' -54.2 NC_005264.1 + 149525 0.68 0.904247
Target:  5'- uUAGCCAgGcgucGCCGUCGUAACCagGAGg -3'
miRNA:   3'- gGUUGGUgC----CGGCGGCGUUGGaaUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.