miRNA display CGI


Results 41 - 60 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24731 5' -54.2 NC_005264.1 + 24668 0.68 0.910396
Target:  5'- gCCAcCUGCGGuucgaCCGCCGUAACCa---- -3'
miRNA:   3'- -GGUuGGUGCC-----GGCGGCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 26563 0.7 0.846905
Target:  5'- gUAACgACGGCCGC-GCAACCc---- -3'
miRNA:   3'- gGUUGgUGCCGGCGgCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 27517 0.71 0.804531
Target:  5'- gCGGgCugGGUCGCCGUAACCc---- -3'
miRNA:   3'- gGUUgGugCCGGCGGCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 27987 0.67 0.942267
Target:  5'- aCGACCGCcGuaGCCGCGGCCc---- -3'
miRNA:   3'- gGUUGGUGcCggCGGCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 30362 0.67 0.932603
Target:  5'- gCGGCCACguGGCUGCCGUAAUUc---- -3'
miRNA:   3'- gGUUGGUG--CCGGCGGCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 30393 0.67 0.942267
Target:  5'- cUCGGCgGCGGCgGUCGCGcGCCggugcgGAGa -3'
miRNA:   3'- -GGUUGgUGCCGgCGGCGU-UGGaa----UUC- -5'
24731 5' -54.2 NC_005264.1 + 30429 0.71 0.777158
Target:  5'- aCAGCCGCGGCUuguagcucguGCCuGCGGCCa---- -3'
miRNA:   3'- gGUUGGUGCCGG----------CGG-CGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 30542 0.71 0.786425
Target:  5'- gCCGACCGCGG-UGUCGCGAUCa---- -3'
miRNA:   3'- -GGUUGGUGCCgGCGGCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 30610 0.68 0.910396
Target:  5'- cCCGGCgACGGCgGCgGCGACg----- -3'
miRNA:   3'- -GGUUGgUGCCGgCGgCGUUGgaauuc -5'
24731 5' -54.2 NC_005264.1 + 30853 0.67 0.927411
Target:  5'- gUCGGCgGCGGCgCGCCGC--CCggUAGGc -3'
miRNA:   3'- -GGUUGgUGCCG-GCGGCGuuGGa-AUUC- -5'
24731 5' -54.2 NC_005264.1 + 31342 0.66 0.963688
Target:  5'- aCCGGCCACGcaagaacucgcugacGCCuGCCG-GGCCUUuAGa -3'
miRNA:   3'- -GGUUGGUGC---------------CGG-CGGCgUUGGAAuUC- -5'
24731 5' -54.2 NC_005264.1 + 31865 0.7 0.846905
Target:  5'- uCCAGCgccuCGCGGUCGgCGCAcGCCUUGu- -3'
miRNA:   3'- -GGUUG----GUGCCGGCgGCGU-UGGAAUuc -5'
24731 5' -54.2 NC_005264.1 + 32390 0.73 0.688992
Target:  5'- gCGGCCgGCGuCCGCCGCGACUUUGu- -3'
miRNA:   3'- gGUUGG-UGCcGGCGGCGUUGGAAUuc -5'
24731 5' -54.2 NC_005264.1 + 32561 0.69 0.862536
Target:  5'- gCuGCCGCGguaGCCGCCGCAACg----- -3'
miRNA:   3'- gGuUGGUGC---CGGCGGCGUUGgaauuc -5'
24731 5' -54.2 NC_005264.1 + 32790 0.73 0.688992
Target:  5'- gCAGCgACGGUCugGCCGCAACCa---- -3'
miRNA:   3'- gGUUGgUGCCGG--CGGCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 33348 0.73 0.668641
Target:  5'- gCCaAACCcUGcGCCGCCGCAAUCUcGAGu -3'
miRNA:   3'- -GG-UUGGuGC-CGGCGGCGUUGGAaUUC- -5'
24731 5' -54.2 NC_005264.1 + 33940 0.66 0.954991
Target:  5'- -aGGCCGUGGCgCGCCGgGACCg---- -3'
miRNA:   3'- ggUUGGUGCCG-GCGGCgUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 34114 0.66 0.950982
Target:  5'- -uGACCAUGGCCuUCGCuGCCUcuGGu -3'
miRNA:   3'- ggUUGGUGCCGGcGGCGuUGGAauUC- -5'
24731 5' -54.2 NC_005264.1 + 34878 0.69 0.854822
Target:  5'- gCUAACCGguuccaGGCCGCCGCcuUCUUcGAGg -3'
miRNA:   3'- -GGUUGGUg-----CCGGCGGCGuuGGAA-UUC- -5'
24731 5' -54.2 NC_005264.1 + 35003 0.71 0.786425
Target:  5'- -aGACCGcCGGCCGCCGCGgaggcaacGCUgucggGAGa -3'
miRNA:   3'- ggUUGGU-GCCGGCGGCGU--------UGGaa---UUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.