miRNA display CGI


Results 81 - 100 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24731 5' -54.2 NC_005264.1 + 47211 0.69 0.854822
Target:  5'- -gGGCCACGGCCGUCGaUGGCUggucgGAGc -3'
miRNA:   3'- ggUUGGUGCCGGCGGC-GUUGGaa---UUC- -5'
24731 5' -54.2 NC_005264.1 + 47733 0.69 0.87004
Target:  5'- uCUAGCCAgGGCCacuuCCGCGAgCUaGAGa -3'
miRNA:   3'- -GGUUGGUgCCGGc---GGCGUUgGAaUUC- -5'
24731 5' -54.2 NC_005264.1 + 49162 0.66 0.968789
Target:  5'- cCCcACaGCGGCCGCgGCAAgUUUcGGa -3'
miRNA:   3'- -GGuUGgUGCCGGCGgCGUUgGAAuUC- -5'
24731 5' -54.2 NC_005264.1 + 49325 0.67 0.932603
Target:  5'- aCCucCCGCGGCUGuUCGCGcucgGCCcgGAGg -3'
miRNA:   3'- -GGuuGGUGCCGGC-GGCGU----UGGaaUUC- -5'
24731 5' -54.2 NC_005264.1 + 49584 0.66 0.950982
Target:  5'- cUCGGCgCAC-GCCGCCgGCGACCa---- -3'
miRNA:   3'- -GGUUG-GUGcCGGCGG-CGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 49804 0.72 0.748611
Target:  5'- --cGCCGCGGCCcaGUCGCGGCCg---- -3'
miRNA:   3'- gguUGGUGCCGG--CGGCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 49844 0.75 0.586709
Target:  5'- gCGAgCACGuaCGCCGCAGCCUUcuGg -3'
miRNA:   3'- gGUUgGUGCcgGCGGCGUUGGAAuuC- -5'
24731 5' -54.2 NC_005264.1 + 50317 0.66 0.962327
Target:  5'- aCGGCCugGaGCCGCgaguacgcggCGuCGACCUUGu- -3'
miRNA:   3'- gGUUGGugC-CGGCG----------GC-GUUGGAAUuc -5'
24731 5' -54.2 NC_005264.1 + 50497 0.76 0.487519
Target:  5'- -uGGCCACGGCCGCgGCcaguucuGCCUUGGu -3'
miRNA:   3'- ggUUGGUGCCGGCGgCGu------UGGAAUUc -5'
24731 5' -54.2 NC_005264.1 + 51087 0.66 0.954991
Target:  5'- aCCugcuUCGCGGUCGCCGguGCUg---- -3'
miRNA:   3'- -GGuu--GGUGCCGGCGGCguUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 51432 0.67 0.937554
Target:  5'- uCCGGCa--GGCCGCCcuccaCGACCUUGu- -3'
miRNA:   3'- -GGUUGgugCCGGCGGc----GUUGGAAUuc -5'
24731 5' -54.2 NC_005264.1 + 52269 0.69 0.857932
Target:  5'- cCCGGCCACGGCaucuacaaugcgguaCG-CGCGACCUc--- -3'
miRNA:   3'- -GGUUGGUGCCG---------------GCgGCGUUGGAauuc -5'
24731 5' -54.2 NC_005264.1 + 52686 0.66 0.962327
Target:  5'- cCCAaaGCCGCGGCggguuuCGCCGCccGCCc---- -3'
miRNA:   3'- -GGU--UGGUGCCG------GCGGCGu-UGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 52803 0.67 0.932603
Target:  5'- gCUuGCCGC-GCCGCUGCAAUCUcgUGAa -3'
miRNA:   3'- -GGuUGGUGcCGGCGGCGUUGGA--AUUc -5'
24731 5' -54.2 NC_005264.1 + 55634 0.76 0.536319
Target:  5'- gCCAACCGC-GCgCGCCGCcGCCUUuAGu -3'
miRNA:   3'- -GGUUGGUGcCG-GCGGCGuUGGAAuUC- -5'
24731 5' -54.2 NC_005264.1 + 55896 0.78 0.431899
Target:  5'- cUCAGaucCUGCGGCCGCCGCAGCUgucGAGg -3'
miRNA:   3'- -GGUU---GGUGCCGGCGGCGUUGGaa-UUC- -5'
24731 5' -54.2 NC_005264.1 + 56228 0.67 0.932603
Target:  5'- aCCGuccuUCACGuaCGCCGCGACCc---- -3'
miRNA:   3'- -GGUu---GGUGCcgGCGGCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 56318 0.67 0.932603
Target:  5'- gCGGCCGCGcugccGCCGUCGCGcACCg---- -3'
miRNA:   3'- gGUUGGUGC-----CGGCGGCGU-UGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 58740 0.75 0.556324
Target:  5'- gCAuCCGCGGCCGCCGCuGCgCUa--- -3'
miRNA:   3'- gGUuGGUGCCGGCGGCGuUG-GAauuc -5'
24731 5' -54.2 NC_005264.1 + 59104 0.69 0.87004
Target:  5'- cCUAAgCAUGGCgGCCGCcGCCg---- -3'
miRNA:   3'- -GGUUgGUGCCGgCGGCGuUGGaauuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.