miRNA display CGI


Results 101 - 120 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24731 5' -54.2 NC_005264.1 + 59779 0.66 0.965665
Target:  5'- gCCGuggcuguCCACGGCCguguccGCCGCGgaGCCg---- -3'
miRNA:   3'- -GGUu------GGUGCCGG------CGGCGU--UGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 59974 0.66 0.965665
Target:  5'- cUCAGCCacgcgGCGGUgGCCGCGAgCg---- -3'
miRNA:   3'- -GGUUGG-----UGCCGgCGGCGUUgGaauuc -5'
24731 5' -54.2 NC_005264.1 + 60004 0.67 0.932603
Target:  5'- aCGGCCGC-GUgGCCGCGGCCc-AAGa -3'
miRNA:   3'- gGUUGGUGcCGgCGGCGUUGGaaUUC- -5'
24731 5' -54.2 NC_005264.1 + 60091 0.68 0.921979
Target:  5'- cCUAGCCuacugccgGCGGCCcacaacGCCGCGACUUUu-- -3'
miRNA:   3'- -GGUUGG--------UGCCGG------CGGCGUUGGAAuuc -5'
24731 5' -54.2 NC_005264.1 + 60722 0.7 0.846103
Target:  5'- -uGGCCGCGGCCucguaccGCCGcCAGCCg---- -3'
miRNA:   3'- ggUUGGUGCCGG-------CGGC-GUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 61254 0.66 0.958771
Target:  5'- uCCAGCuCACGGCgCGCCuCGGCgUa--- -3'
miRNA:   3'- -GGUUG-GUGCCG-GCGGcGUUGgAauuc -5'
24731 5' -54.2 NC_005264.1 + 61601 0.66 0.965665
Target:  5'- gCCGGCCACGGuCUGCacaaaCGCGugCa---- -3'
miRNA:   3'- -GGUUGGUGCC-GGCG-----GCGUugGaauuc -5'
24731 5' -54.2 NC_005264.1 + 61916 0.66 0.965665
Target:  5'- -aGGCgCACGGgCGCCGCcGCUUgcgcgAAGa -3'
miRNA:   3'- ggUUG-GUGCCgGCGGCGuUGGAa----UUC- -5'
24731 5' -54.2 NC_005264.1 + 62363 0.76 0.536319
Target:  5'- uCCAggGCCcUGGCCGCCGCGACagcgaaCUUGGGc -3'
miRNA:   3'- -GGU--UGGuGCCGGCGGCGUUG------GAAUUC- -5'
24731 5' -54.2 NC_005264.1 + 62759 0.68 0.916307
Target:  5'- ---cCCGCGGCCGCCauGCuacGCCcUAGGc -3'
miRNA:   3'- gguuGGUGCCGGCGG--CGu--UGGaAUUC- -5'
24731 5' -54.2 NC_005264.1 + 62817 0.72 0.72905
Target:  5'- gCAGCaGC-GCCGCCGCGGCCUUc-- -3'
miRNA:   3'- gGUUGgUGcCGGCGGCGUUGGAAuuc -5'
24731 5' -54.2 NC_005264.1 + 63046 0.67 0.932603
Target:  5'- aCCAucGCCuCGGCCGCCuuGAUCUc--- -3'
miRNA:   3'- -GGU--UGGuGCCGGCGGcgUUGGAauuc -5'
24731 5' -54.2 NC_005264.1 + 63081 0.67 0.942267
Target:  5'- cUCGGCgAgGGCCGUCGCGgaaagGCCUa--- -3'
miRNA:   3'- -GGUUGgUgCCGGCGGCGU-----UGGAauuc -5'
24731 5' -54.2 NC_005264.1 + 63200 0.76 0.51657
Target:  5'- uUCuGCCACGGCCGCCGUcuCCg---- -3'
miRNA:   3'- -GGuUGGUGCCGGCGGCGuuGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 64142 0.69 0.884401
Target:  5'- gCUcGCCACGG-CGCCGCGAUCc---- -3'
miRNA:   3'- -GGuUGGUGCCgGCGGCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 64406 0.67 0.946742
Target:  5'- cCCGGCCAaGGCCgacGCCGCGGgCa---- -3'
miRNA:   3'- -GGUUGGUgCCGG---CGGCGUUgGaauuc -5'
24731 5' -54.2 NC_005264.1 + 65156 0.69 0.887166
Target:  5'- aCCAacACCGCggcggcgcccucucuGGCCaugGCCGCGGCCUUu-- -3'
miRNA:   3'- -GGU--UGGUG---------------CCGG---CGGCGUUGGAAuuc -5'
24731 5' -54.2 NC_005264.1 + 65236 0.73 0.688992
Target:  5'- -gAGCCGuaGCCGCCGCGGCCgaggAAGc -3'
miRNA:   3'- ggUUGGUgcCGGCGGCGUUGGaa--UUC- -5'
24731 5' -54.2 NC_005264.1 + 65320 0.7 0.830492
Target:  5'- gCCAcGCCACaGCCGCgGCAGCUc---- -3'
miRNA:   3'- -GGU-UGGUGcCGGCGgCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 65752 0.71 0.795552
Target:  5'- uCC-GCCGuCGGCCGgCGCAcCCUUAu- -3'
miRNA:   3'- -GGuUGGU-GCCGGCgGCGUuGGAAUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.