miRNA display CGI


Results 21 - 40 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24731 5' -54.2 NC_005264.1 + 150369 0.66 0.963688
Target:  5'- aCCGGCCACGcaagaacucgcugacGCCuGCCG-GGCCUUuAGa -3'
miRNA:   3'- -GGUUGGUGC---------------CGG-CGGCgUUGGAAuUC- -5'
24731 5' -54.2 NC_005264.1 + 150167 0.66 0.954991
Target:  5'- -gGGCCACGauaaaauuGCUGCCGgcCGGCCUUAAu -3'
miRNA:   3'- ggUUGGUGC--------CGGCGGC--GUUGGAAUUc -5'
24731 5' -54.2 NC_005264.1 + 149879 0.67 0.927411
Target:  5'- gUCGGCgGCGGCgCGCCGC--CCggUAGGc -3'
miRNA:   3'- -GGUUGgUGCCG-GCGGCGuuGGa-AUUC- -5'
24731 5' -54.2 NC_005264.1 + 149637 0.68 0.910396
Target:  5'- cCCGGCgACGGCgGCgGCGACg----- -3'
miRNA:   3'- -GGUUGgUGCCGgCGgCGUUGgaauuc -5'
24731 5' -54.2 NC_005264.1 + 149525 0.68 0.904247
Target:  5'- uUAGCCAgGcgucGCCGUCGUAACCagGAGg -3'
miRNA:   3'- gGUUGGUgC----CGGCGGCGUUGGaaUUC- -5'
24731 5' -54.2 NC_005264.1 + 149420 0.67 0.942267
Target:  5'- cUCGGCgGCGGCgGUCGCGcGCCggugcgGAGa -3'
miRNA:   3'- -GGUUGgUGCCGgCGGCGU-UGGaa----UUC- -5'
24731 5' -54.2 NC_005264.1 + 147892 0.66 0.958771
Target:  5'- -uGGCCuccagguCGGCUGCCGCGuagacGCCUUc-- -3'
miRNA:   3'- ggUUGGu------GCCGGCGGCGU-----UGGAAuuc -5'
24731 5' -54.2 NC_005264.1 + 147355 0.67 0.927411
Target:  5'- gCCAGgcCCAUGcCCGCCGCGAUCg---- -3'
miRNA:   3'- -GGUU--GGUGCcGGCGGCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 145952 0.68 0.904247
Target:  5'- aCCGACgACGGCgacauaucguuUGCCGCcGCCgacAAGg -3'
miRNA:   3'- -GGUUGgUGCCG-----------GCGGCGuUGGaa-UUC- -5'
24731 5' -54.2 NC_005264.1 + 145933 0.73 0.693042
Target:  5'- gCCAucguCCGCGGCCgacgggaauuucucuGCUGCGACCUUc-- -3'
miRNA:   3'- -GGUu---GGUGCCGG---------------CGGCGUUGGAAuuc -5'
24731 5' -54.2 NC_005264.1 + 145480 0.69 0.87004
Target:  5'- -aGACCGC-GCCGCCGCcagcuGCCgcggAAGg -3'
miRNA:   3'- ggUUGGUGcCGGCGGCGu----UGGaa--UUC- -5'
24731 5' -54.2 NC_005264.1 + 145149 0.79 0.363865
Target:  5'- cCCGA-CACGaGCCGCCGCGGCCUcggcugcgccUGAGg -3'
miRNA:   3'- -GGUUgGUGC-CGGCGGCGUUGGA----------AUUC- -5'
24731 5' -54.2 NC_005264.1 + 144825 0.74 0.607142
Target:  5'- cCUGACCGCGGCCGacCCGCcGCCg---- -3'
miRNA:   3'- -GGUUGGUGCCGGC--GGCGuUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 142964 0.67 0.946742
Target:  5'- gCUAG-CGCGGCCGCgGCggUCUcucgggcaUGAGg -3'
miRNA:   3'- -GGUUgGUGCCGGCGgCGuuGGA--------AUUC- -5'
24731 5' -54.2 NC_005264.1 + 142581 0.67 0.932603
Target:  5'- cCCcuCCGCgaGGCCgcGCCGCAACCc---- -3'
miRNA:   3'- -GGuuGGUG--CCGG--CGGCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 141862 0.73 0.678836
Target:  5'- aCGugCAUGGCUGCCGCGaaaGCCa---- -3'
miRNA:   3'- gGUugGUGCCGGCGGCGU---UGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 140864 0.75 0.586709
Target:  5'- aCAGCCgGCGGCCcuaccaauGCCGCGACCa---- -3'
miRNA:   3'- gGUUGG-UGCCGG--------CGGCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 140672 1.1 0.003934
Target:  5'- aCCAACCACGGCCGCCGCAACCUUAAGc -3'
miRNA:   3'- -GGUUGGUGCCGGCGGCGUUGGAAUUC- -5'
24731 5' -54.2 NC_005264.1 + 140374 0.66 0.958771
Target:  5'- aCGACC-CGGaCGCCGuCAGCgCUUAc- -3'
miRNA:   3'- gGUUGGuGCCgGCGGC-GUUG-GAAUuc -5'
24731 5' -54.2 NC_005264.1 + 140255 0.66 0.950982
Target:  5'- cUCGGCgACGGUgaCGCCGCuuCCagGGGg -3'
miRNA:   3'- -GGUUGgUGCCG--GCGGCGuuGGaaUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.