miRNA display CGI


Results 81 - 100 of 258 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24731 5' -54.2 NC_005264.1 + 110149 0.71 0.804531
Target:  5'- gCgGGCgGCGaaacCCGCCGCGGCUUUGGGg -3'
miRNA:   3'- -GgUUGgUGCc---GGCGGCGUUGGAAUUC- -5'
24731 5' -54.2 NC_005264.1 + 109721 0.67 0.946742
Target:  5'- cCCGGCCuccuCGGCCcccucGCCGagcGCCUUGu- -3'
miRNA:   3'- -GGUUGGu---GCCGG-----CGGCgu-UGGAAUuc -5'
24731 5' -54.2 NC_005264.1 + 107651 0.7 0.846905
Target:  5'- gCCGACguuuCGCGGUCGCCGCcuucAGCCg---- -3'
miRNA:   3'- -GGUUG----GUGCCGGCGGCG----UUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 106941 0.75 0.576539
Target:  5'- aCAGCUGCGGCgGCCGCAggAUC-UGAGg -3'
miRNA:   3'- gGUUGGUGCCGgCGGCGU--UGGaAUUC- -5'
24731 5' -54.2 NC_005264.1 + 106021 0.7 0.830492
Target:  5'- gCUAGCUAgGGCCGCCGCGcAgCgcAGGa -3'
miRNA:   3'- -GGUUGGUgCCGGCGGCGU-UgGaaUUC- -5'
24731 5' -54.2 NC_005264.1 + 105980 0.67 0.946742
Target:  5'- cCUAGCCAUGGCCcCCaggaGCAAUCUg--- -3'
miRNA:   3'- -GGUUGGUGCCGGcGG----CGUUGGAauuc -5'
24731 5' -54.2 NC_005264.1 + 105345 0.66 0.96022
Target:  5'- gCC-GCCGCGcgcgccagcaucuucGCCGCCGCcGCCa---- -3'
miRNA:   3'- -GGuUGGUGC---------------CGGCGGCGuUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 105264 0.69 0.891246
Target:  5'- -gAGCCAUGGCCaugaaaCCGCucugcgaaAACCUUGGGg -3'
miRNA:   3'- ggUUGGUGCCGGc-----GGCG--------UUGGAAUUC- -5'
24731 5' -54.2 NC_005264.1 + 104961 0.8 0.332743
Target:  5'- uCCGcGCCAUGGCCGCCGguGCCg---- -3'
miRNA:   3'- -GGU-UGGUGCCGGCGGCguUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 104854 0.77 0.47517
Target:  5'- -gAGCCACGGCCGCCGCGcggggacuccgaugACgaUAGGc -3'
miRNA:   3'- ggUUGGUGCCGGCGGCGU--------------UGgaAUUC- -5'
24731 5' -54.2 NC_005264.1 + 104105 0.67 0.942267
Target:  5'- gCAGCgGCGGCCGCgGaugcCCUgAAGa -3'
miRNA:   3'- gGUUGgUGCCGGCGgCguu-GGAaUUC- -5'
24731 5' -54.2 NC_005264.1 + 103733 0.78 0.388495
Target:  5'- aUCAGCgGCGGCgGCCGCcAugCUUAGGu -3'
miRNA:   3'- -GGUUGgUGCCGgCGGCG-UugGAAUUC- -5'
24731 5' -54.2 NC_005264.1 + 102839 0.69 0.884401
Target:  5'- -gGGCCGCGGCCa-CGCGGCCg---- -3'
miRNA:   3'- ggUUGGUGCCGGcgGCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 102230 0.67 0.937554
Target:  5'- gCGAgC-CGGCUGCCGCGGCauacGAGa -3'
miRNA:   3'- gGUUgGuGCCGGCGGCGUUGgaa-UUC- -5'
24731 5' -54.2 NC_005264.1 + 102116 0.66 0.962327
Target:  5'- gCUGGCgGCGGUacgagGCCGCGGCCa---- -3'
miRNA:   3'- -GGUUGgUGCCGg----CGGCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 100615 0.67 0.942267
Target:  5'- aCGACCccgaaGCGGCCGCggagCGCGcCCUcAAGu -3'
miRNA:   3'- gGUUGG-----UGCCGGCG----GCGUuGGAaUUC- -5'
24731 5' -54.2 NC_005264.1 + 98409 0.66 0.962327
Target:  5'- -gAGCCGCGGCagacgucauCGCCGUgcccgcggcgucGGCCUUGGc -3'
miRNA:   3'- ggUUGGUGCCG---------GCGGCG------------UUGGAAUUc -5'
24731 5' -54.2 NC_005264.1 + 97671 0.68 0.916307
Target:  5'- gCGGCCAUGGCCagagagggcgccGCCGCggUgUUGGu -3'
miRNA:   3'- gGUUGGUGCCGG------------CGGCGuuGgAAUUc -5'
24731 5' -54.2 NC_005264.1 + 97598 0.67 0.937554
Target:  5'- aCCGcuuCCuCGGCCGCgGCGGCUa---- -3'
miRNA:   3'- -GGUu--GGuGCCGGCGgCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 94673 0.74 0.607142
Target:  5'- gUAGCCGCGGCgggCGCCGCAACgUUc-- -3'
miRNA:   3'- gGUUGGUGCCG---GCGGCGUUGgAAuuc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.