miRNA display CGI


Results 61 - 80 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24731 5' -54.2 NC_005264.1 + 65320 0.7 0.830492
Target:  5'- gCCAcGCCACaGCCGCgGCAGCUc---- -3'
miRNA:   3'- -GGU-UGGUGcCGGCGgCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 31865 0.7 0.846905
Target:  5'- uCCAGCgccuCGCGGUCGgCGCAcGCCUUGu- -3'
miRNA:   3'- -GGUUG----GUGCCGGCgGCGU-UGGAAUuc -5'
24731 5' -54.2 NC_005264.1 + 93790 0.76 0.506805
Target:  5'- aCCuGCC-CGGCgGCCGCGGCCaaGAGa -3'
miRNA:   3'- -GGuUGGuGCCGgCGGCGUUGGaaUUC- -5'
24731 5' -54.2 NC_005264.1 + 118054 0.75 0.566408
Target:  5'- gCGACCGCGGCgucggcaacgauCGCCGCGggcACCUUuGGg -3'
miRNA:   3'- gGUUGGUGCCG------------GCGGCGU---UGGAAuUC- -5'
24731 5' -54.2 NC_005264.1 + 94673 0.74 0.607142
Target:  5'- gUAGCCGCGGCgggCGCCGCAACgUUc-- -3'
miRNA:   3'- gGUUGGUGCCG---GCGGCGUUGgAAuuc -5'
24731 5' -54.2 NC_005264.1 + 7944 0.74 0.637913
Target:  5'- gUCGuCCACGGCCGCgGCGucuuugucgcuGCCUaGAGg -3'
miRNA:   3'- -GGUuGGUGCCGGCGgCGU-----------UGGAaUUC- -5'
24731 5' -54.2 NC_005264.1 + 42016 0.72 0.70815
Target:  5'- gUCGGCCACGGCggcagugucgacgCGCaCGCGGCCUa--- -3'
miRNA:   3'- -GGUUGGUGCCG-------------GCG-GCGUUGGAauuc -5'
24731 5' -54.2 NC_005264.1 + 9340 0.72 0.748611
Target:  5'- gCCAGggGCGGCCGCCGUuuuGCCg---- -3'
miRNA:   3'- -GGUUggUGCCGGCGGCGu--UGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 30542 0.71 0.786425
Target:  5'- gCCGACCGCGG-UGUCGCGAUCa---- -3'
miRNA:   3'- -GGUUGGUGCCgGCGGCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 122892 0.71 0.795552
Target:  5'- gCAGCCGaGGUCGCCGUGGCCc---- -3'
miRNA:   3'- gGUUGGUgCCGGCGGCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 60004 0.67 0.932603
Target:  5'- aCGGCCGC-GUgGCCGCGGCCc-AAGa -3'
miRNA:   3'- gGUUGGUGcCGgCGGCGUUGGaaUUC- -5'
24731 5' -54.2 NC_005264.1 + 49325 0.67 0.932603
Target:  5'- aCCucCCGCGGCUGuUCGCGcucgGCCcgGAGg -3'
miRNA:   3'- -GGuuGGUGCCGGC-GGCGU----UGGaaUUC- -5'
24731 5' -54.2 NC_005264.1 + 34878 0.69 0.854822
Target:  5'- gCUAACCGguuccaGGCCGCCGCcuUCUUcGAGg -3'
miRNA:   3'- -GGUUGGUg-----CCGGCGGCGuuGGAA-UUC- -5'
24731 5' -54.2 NC_005264.1 + 32561 0.69 0.862536
Target:  5'- gCuGCCGCGguaGCCGCCGCAACg----- -3'
miRNA:   3'- gGuUGGUGC---CGGCGGCGUUGgaauuc -5'
24731 5' -54.2 NC_005264.1 + 131047 0.69 0.87733
Target:  5'- gCGGCgGCGaCCGCCGC--CCUUAGGc -3'
miRNA:   3'- gGUUGgUGCcGGCGGCGuuGGAAUUC- -5'
24731 5' -54.2 NC_005264.1 + 65156 0.69 0.887166
Target:  5'- aCCAacACCGCggcggcgcccucucuGGCCaugGCCGCGGCCUUu-- -3'
miRNA:   3'- -GGU--UGGUG---------------CCGG---CGGCGUUGGAAuuc -5'
24731 5' -54.2 NC_005264.1 + 19527 0.68 0.910396
Target:  5'- -aAGCUcgggACGGCCGCCGcCAACgUUGc- -3'
miRNA:   3'- ggUUGG----UGCCGGCGGC-GUUGgAAUuc -5'
24731 5' -54.2 NC_005264.1 + 149637 0.68 0.910396
Target:  5'- cCCGGCgACGGCgGCgGCGACg----- -3'
miRNA:   3'- -GGUUGgUGCCGgCGgCGUUGgaauuc -5'
24731 5' -54.2 NC_005264.1 + 127013 0.68 0.916307
Target:  5'- uCCGugCACgGGCCGCCauuGCGggGCCggcaGAGg -3'
miRNA:   3'- -GGUugGUG-CCGGCGG---CGU--UGGaa--UUC- -5'
24731 5' -54.2 NC_005264.1 + 72018 0.67 0.926879
Target:  5'- aCGugCGCGGCCGCCacacgcgagacguGCuGACCUc--- -3'
miRNA:   3'- gGUugGUGCCGGCGG-------------CG-UUGGAauuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.