miRNA display CGI


Results 81 - 100 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24731 5' -54.2 NC_005264.1 + 19881 0.69 0.854822
Target:  5'- aCC-GCCGCGGCCG-CGCuAGCCa---- -3'
miRNA:   3'- -GGuUGGUGCCGGCgGCG-UUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 59104 0.69 0.87004
Target:  5'- cCUAAgCAUGGCgGCCGCcGCCg---- -3'
miRNA:   3'- -GGUUgGUGCCGgCGGCGuUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 161639 0.69 0.884401
Target:  5'- gCAGCCAUGGCCGCgGaCGcCCg---- -3'
miRNA:   3'- gGUUGGUGCCGGCGgC-GUuGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 67480 0.68 0.897862
Target:  5'- cCCGagGCCG-GGCCGCCGCcccGCCg---- -3'
miRNA:   3'- -GGU--UGGUgCCGGCGGCGu--UGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 68432 0.68 0.910396
Target:  5'- -gGACUAcCGG-CGCCGCGGCCUg--- -3'
miRNA:   3'- ggUUGGU-GCCgGCGGCGUUGGAauuc -5'
24731 5' -54.2 NC_005264.1 + 127013 0.68 0.916307
Target:  5'- uCCGugCACgGGCCGCCauuGCGggGCCggcaGAGg -3'
miRNA:   3'- -GGUugGUG-CCGGCGG---CGU--UGGaa--UUC- -5'
24731 5' -54.2 NC_005264.1 + 72018 0.67 0.926879
Target:  5'- aCGugCGCGGCCGCCacacgcgagacguGCuGACCUc--- -3'
miRNA:   3'- gGUugGUGCCGGCGG-------------CG-UUGGAauuc -5'
24731 5' -54.2 NC_005264.1 + 122892 0.71 0.795552
Target:  5'- gCAGCCGaGGUCGCCGUGGCCc---- -3'
miRNA:   3'- gGUUGGUgCCGGCGGCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 30542 0.71 0.786425
Target:  5'- gCCGACCGCGG-UGUCGCGAUCa---- -3'
miRNA:   3'- -GGUUGGUGCCgGCGGCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 9340 0.72 0.748611
Target:  5'- gCCAGggGCGGCCGCCGUuuuGCCg---- -3'
miRNA:   3'- -GGUUggUGCCGGCGGCGu--UGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 97598 0.67 0.937554
Target:  5'- aCCGcuuCCuCGGCCGCgGCGGCUa---- -3'
miRNA:   3'- -GGUu--GGuGCCGGCGgCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 149420 0.67 0.942267
Target:  5'- cUCGGCgGCGGCgGUCGCGcGCCggugcgGAGa -3'
miRNA:   3'- -GGUUGgUGCCGgCGGCGU-UGGaa----UUC- -5'
24731 5' -54.2 NC_005264.1 + 82955 0.67 0.942267
Target:  5'- gCCuGCgACGGUCGCCGCcgcGCCc---- -3'
miRNA:   3'- -GGuUGgUGCCGGCGGCGu--UGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 109721 0.67 0.946742
Target:  5'- cCCGGCCuccuCGGCCcccucGCCGagcGCCUUGu- -3'
miRNA:   3'- -GGUUGGu---GCCGG-----CGGCgu-UGGAAUuc -5'
24731 5' -54.2 NC_005264.1 + 71453 0.66 0.950982
Target:  5'- gCCAACCACucugacaauggaGGCCauuGCCGaCAggauaACCUUGAu -3'
miRNA:   3'- -GGUUGGUG------------CCGG---CGGC-GU-----UGGAAUUc -5'
24731 5' -54.2 NC_005264.1 + 93790 0.76 0.506805
Target:  5'- aCCuGCC-CGGCgGCCGCGGCCaaGAGa -3'
miRNA:   3'- -GGuUGGuGCCGgCGGCGUUGGaaUUC- -5'
24731 5' -54.2 NC_005264.1 + 118054 0.75 0.566408
Target:  5'- gCGACCGCGGCgucggcaacgauCGCCGCGggcACCUUuGGg -3'
miRNA:   3'- gGUUGGUGCCG------------GCGGCGU---UGGAAuUC- -5'
24731 5' -54.2 NC_005264.1 + 94673 0.74 0.607142
Target:  5'- gUAGCCGCGGCgggCGCCGCAACgUUc-- -3'
miRNA:   3'- gGUUGGUGCCG---GCGGCGUUGgAAuuc -5'
24731 5' -54.2 NC_005264.1 + 7944 0.74 0.637913
Target:  5'- gUCGuCCACGGCCGCgGCGucuuugucgcuGCCUaGAGg -3'
miRNA:   3'- -GGUuGGUGCCGGCGgCGU-----------UGGAaUUC- -5'
24731 5' -54.2 NC_005264.1 + 42016 0.72 0.70815
Target:  5'- gUCGGCCACGGCggcagugucgacgCGCaCGCGGCCUa--- -3'
miRNA:   3'- -GGUUGGUGCCG-------------GCG-GCGUUGGAauuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.