miRNA display CGI


Results 101 - 120 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24731 5' -54.2 NC_005264.1 + 105980 0.67 0.946742
Target:  5'- cCUAGCCAUGGCCcCCaggaGCAAUCUg--- -3'
miRNA:   3'- -GGUUGGUGCCGGcGG----CGUUGGAauuc -5'
24731 5' -54.2 NC_005264.1 + 88384 0.66 0.950982
Target:  5'- ---uUCACGGCCaGCCGCAugCc---- -3'
miRNA:   3'- gguuGGUGCCGG-CGGCGUugGaauuc -5'
24731 5' -54.2 NC_005264.1 + 22050 0.66 0.950982
Target:  5'- aCCGacGCCuuggACGGUagCGCCGCcGCCggAAGg -3'
miRNA:   3'- -GGU--UGG----UGCCG--GCGGCGuUGGaaUUC- -5'
24731 5' -54.2 NC_005264.1 + 51087 0.66 0.954991
Target:  5'- aCCugcuUCGCGGUCGCCGguGCUg---- -3'
miRNA:   3'- -GGuu--GGUGCCGGCGGCguUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 61254 0.66 0.958771
Target:  5'- uCCAGCuCACGGCgCGCCuCGGCgUa--- -3'
miRNA:   3'- -GGUUG-GUGCCG-GCGGcGUUGgAauuc -5'
24731 5' -54.2 NC_005264.1 + 67480 0.68 0.897862
Target:  5'- cCCGagGCCG-GGCCGCCGCcccGCCg---- -3'
miRNA:   3'- -GGU--UGGUgCCGGCGGCGu--UGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 161639 0.69 0.884401
Target:  5'- gCAGCCAUGGCCGCgGaCGcCCg---- -3'
miRNA:   3'- gGUUGGUGCCGGCGgC-GUuGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 93790 0.76 0.506805
Target:  5'- aCCuGCC-CGGCgGCCGCGGCCaaGAGa -3'
miRNA:   3'- -GGuUGGuGCCGgCGGCGUUGGaaUUC- -5'
24731 5' -54.2 NC_005264.1 + 118054 0.75 0.566408
Target:  5'- gCGACCGCGGCgucggcaacgauCGCCGCGggcACCUUuGGg -3'
miRNA:   3'- gGUUGGUGCCG------------GCGGCGU---UGGAAuUC- -5'
24731 5' -54.2 NC_005264.1 + 94673 0.74 0.607142
Target:  5'- gUAGCCGCGGCgggCGCCGCAACgUUc-- -3'
miRNA:   3'- gGUUGGUGCCG---GCGGCGUUGgAAuuc -5'
24731 5' -54.2 NC_005264.1 + 7944 0.74 0.637913
Target:  5'- gUCGuCCACGGCCGCgGCGucuuugucgcuGCCUaGAGg -3'
miRNA:   3'- -GGUuGGUGCCGGCGgCGU-----------UGGAaUUC- -5'
24731 5' -54.2 NC_005264.1 + 42016 0.72 0.70815
Target:  5'- gUCGGCCACGGCggcagugucgacgCGCaCGCGGCCUa--- -3'
miRNA:   3'- -GGUUGGUGCCG-------------GCG-GCGUUGGAauuc -5'
24731 5' -54.2 NC_005264.1 + 9340 0.72 0.748611
Target:  5'- gCCAGggGCGGCCGCCGUuuuGCCg---- -3'
miRNA:   3'- -GGUUggUGCCGGCGGCGu--UGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 30542 0.71 0.786425
Target:  5'- gCCGACCGCGG-UGUCGCGAUCa---- -3'
miRNA:   3'- -GGUUGGUGCCgGCGGCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 122892 0.71 0.795552
Target:  5'- gCAGCCGaGGUCGCCGUGGCCc---- -3'
miRNA:   3'- gGUUGGUgCCGGCGGCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 106021 0.7 0.830492
Target:  5'- gCUAGCUAgGGCCGCCGCGcAgCgcAGGa -3'
miRNA:   3'- -GGUUGGUgCCGGCGGCGU-UgGaaUUC- -5'
24731 5' -54.2 NC_005264.1 + 60722 0.7 0.846103
Target:  5'- -uGGCCGCGGCCucguaccGCCGcCAGCCg---- -3'
miRNA:   3'- ggUUGGUGCCGG-------CGGC-GUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 160361 0.7 0.846905
Target:  5'- gCCGACCAUcGUCGaaGCAGCCgcgAAGg -3'
miRNA:   3'- -GGUUGGUGcCGGCggCGUUGGaa-UUC- -5'
24731 5' -54.2 NC_005264.1 + 19881 0.69 0.854822
Target:  5'- aCC-GCCGCGGCCG-CGCuAGCCa---- -3'
miRNA:   3'- -GGuUGGUGCCGGCgGCG-UUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 59104 0.69 0.87004
Target:  5'- cCUAAgCAUGGCgGCCGCcGCCg---- -3'
miRNA:   3'- -GGUUgGUGCCGgCGGCGuUGGaauuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.