miRNA display CGI


Results 61 - 80 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24731 5' -54.2 NC_005264.1 + 12307 0.66 0.958771
Target:  5'- cCCgAGCCugGaGCCGCC-UGACCUUc-- -3'
miRNA:   3'- -GG-UUGGugC-CGGCGGcGUUGGAAuuc -5'
24731 5' -54.2 NC_005264.1 + 33940 0.66 0.954991
Target:  5'- -aGGCCGUGGCgCGCCGgGACCg---- -3'
miRNA:   3'- ggUUGGUGCCG-GCGGCgUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 66112 0.67 0.942267
Target:  5'- aUCAGCCGCGucugagaccCCGuCCGCAACCg---- -3'
miRNA:   3'- -GGUUGGUGCc--------GGC-GGCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 134922 0.67 0.942267
Target:  5'- gCCAacACCGCGGUCGUCGUcGCUc---- -3'
miRNA:   3'- -GGU--UGGUGCCGGCGGCGuUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 104105 0.67 0.942267
Target:  5'- gCAGCgGCGGCCGCgGaugcCCUgAAGa -3'
miRNA:   3'- gGUUGgUGCCGGCGgCguu-GGAaUUC- -5'
24731 5' -54.2 NC_005264.1 + 35466 0.67 0.942267
Target:  5'- aUCAGCgACGGUCGCCcccucaAACCcUAGGg -3'
miRNA:   3'- -GGUUGgUGCCGGCGGcg----UUGGaAUUC- -5'
24731 5' -54.2 NC_005264.1 + 30393 0.67 0.942267
Target:  5'- cUCGGCgGCGGCgGUCGCGcGCCggugcgGAGa -3'
miRNA:   3'- -GGUUGgUGCCGgCGGCGU-UGGaa----UUC- -5'
24731 5' -54.2 NC_005264.1 + 102230 0.67 0.937554
Target:  5'- gCGAgC-CGGCUGCCGCGGCauacGAGa -3'
miRNA:   3'- gGUUgGuGCCGGCGGCGUUGgaa-UUC- -5'
24731 5' -54.2 NC_005264.1 + 37585 0.67 0.937554
Target:  5'- gCAAgucUCGCGGCgGCCGCGGCgg-GGGg -3'
miRNA:   3'- gGUU---GGUGCCGgCGGCGUUGgaaUUC- -5'
24731 5' -54.2 NC_005264.1 + 24249 0.67 0.937554
Target:  5'- cCCcACCGCuGCCGCgGaaguCAACCUUAGu -3'
miRNA:   3'- -GGuUGGUGcCGGCGgC----GUUGGAAUUc -5'
24731 5' -54.2 NC_005264.1 + 100615 0.67 0.942267
Target:  5'- aCGACCccgaaGCGGCCGCggagCGCGcCCUcAAGu -3'
miRNA:   3'- gGUUGG-----UGCCGGCG----GCGUuGGAaUUC- -5'
24731 5' -54.2 NC_005264.1 + 6256 0.67 0.946742
Target:  5'- cUCcgUCGCGGUCGUCGCcGCCgucggGAGg -3'
miRNA:   3'- -GGuuGGUGCCGGCGGCGuUGGaa---UUC- -5'
24731 5' -54.2 NC_005264.1 + 151842 0.66 0.954991
Target:  5'- -aGACUggGGCCGCCGCu-CCg---- -3'
miRNA:   3'- ggUUGGugCCGGCGGCGuuGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 150167 0.66 0.954991
Target:  5'- -gGGCCACGauaaaauuGCUGCCGgcCGGCCUUAAu -3'
miRNA:   3'- ggUUGGUGC--------CGGCGGC--GUUGGAAUUc -5'
24731 5' -54.2 NC_005264.1 + 137506 0.66 0.952613
Target:  5'- cCCAACUcgucCGGCCGCCGgauuuuuugcuagguCGGCCUc--- -3'
miRNA:   3'- -GGUUGGu---GCCGGCGGC---------------GUUGGAauuc -5'
24731 5' -54.2 NC_005264.1 + 40634 0.66 0.950982
Target:  5'- cCCuuCCcCGcGCCGUCGCGACgCggAGGg -3'
miRNA:   3'- -GGuuGGuGC-CGGCGGCGUUG-GaaUUC- -5'
24731 5' -54.2 NC_005264.1 + 162815 0.66 0.950982
Target:  5'- aCAGCUAgGGCCGCgGCGuuauggcguGCCg---- -3'
miRNA:   3'- gGUUGGUgCCGGCGgCGU---------UGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 154068 0.66 0.950982
Target:  5'- aCAACCGC-GCCGCCGUAgagGCUc---- -3'
miRNA:   3'- gGUUGGUGcCGGCGGCGU---UGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 20021 0.66 0.950982
Target:  5'- gUCuACCACGGCgCGCuCGCAcCCg---- -3'
miRNA:   3'- -GGuUGGUGCCG-GCG-GCGUuGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 142964 0.67 0.946742
Target:  5'- gCUAG-CGCGGCCGCgGCggUCUcucgggcaUGAGg -3'
miRNA:   3'- -GGUUgGUGCCGGCGgCGuuGGA--------AUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.