miRNA display CGI


Results 21 - 40 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24731 5' -54.2 NC_005264.1 + 61916 0.66 0.965665
Target:  5'- -aGGCgCACGGgCGCCGCcGCUUgcgcgAAGa -3'
miRNA:   3'- ggUUG-GUGCCgGCGGCGuUGGAa----UUC- -5'
24731 5' -54.2 NC_005264.1 + 43908 0.66 0.965665
Target:  5'- aCGAUagCGCGGCCGUCGCcucGACgUcGAGg -3'
miRNA:   3'- gGUUG--GUGCCGGCGGCG---UUGgAaUUC- -5'
24731 5' -54.2 NC_005264.1 + 150369 0.66 0.963688
Target:  5'- aCCGGCCACGcaagaacucgcugacGCCuGCCG-GGCCUUuAGa -3'
miRNA:   3'- -GGUUGGUGC---------------CGG-CGGCgUUGGAAuUC- -5'
24731 5' -54.2 NC_005264.1 + 31342 0.66 0.963688
Target:  5'- aCCGGCCACGcaagaacucgcugacGCCuGCCG-GGCCUUuAGa -3'
miRNA:   3'- -GGUUGGUGC---------------CGG-CGGCgUUGGAAuUC- -5'
24731 5' -54.2 NC_005264.1 + 24631 0.66 0.962327
Target:  5'- gCGACUGCGGuuGUCGUuuggccGCCUUGu- -3'
miRNA:   3'- gGUUGGUGCCggCGGCGu-----UGGAAUuc -5'
24731 5' -54.2 NC_005264.1 + 19994 0.66 0.962327
Target:  5'- aCCGACCGCGcUCGCuCGCAuCCg---- -3'
miRNA:   3'- -GGUUGGUGCcGGCG-GCGUuGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 52686 0.66 0.962327
Target:  5'- cCCAaaGCCGCGGCggguuuCGCCGCccGCCc---- -3'
miRNA:   3'- -GGU--UGGUGCCG------GCGGCGu-UGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 102116 0.66 0.962327
Target:  5'- gCUGGCgGCGGUacgagGCCGCGGCCa---- -3'
miRNA:   3'- -GGUUGgUGCCGg----CGGCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 50317 0.66 0.962327
Target:  5'- aCGGCCugGaGCCGCgaguacgcggCGuCGACCUUGu- -3'
miRNA:   3'- gGUUGGugC-CGGCG----------GC-GUUGGAAUuc -5'
24731 5' -54.2 NC_005264.1 + 35753 0.66 0.962327
Target:  5'- cCCGACUGCGGCCGCgaCGUGGgUgaaGAGg -3'
miRNA:   3'- -GGUUGGUGCCGGCG--GCGUUgGaa-UUC- -5'
24731 5' -54.2 NC_005264.1 + 98409 0.66 0.962327
Target:  5'- -gAGCCGCGGCagacgucauCGCCGUgcccgcggcgucGGCCUUGGc -3'
miRNA:   3'- ggUUGGUGCCG---------GCGGCG------------UUGGAAUUc -5'
24731 5' -54.2 NC_005264.1 + 2880 0.66 0.962327
Target:  5'- aUCGACCGgGGCgCGgCGCGGCgggGAGg -3'
miRNA:   3'- -GGUUGGUgCCG-GCgGCGUUGgaaUUC- -5'
24731 5' -54.2 NC_005264.1 + 154779 0.66 0.962327
Target:  5'- cCCGACUGCGGCCGCgaCGUGGgUgaaGAGg -3'
miRNA:   3'- -GGUUGGUGCCGGCG--GCGUUgGaa-UUC- -5'
24731 5' -54.2 NC_005264.1 + 114439 0.66 0.962327
Target:  5'- cCCAcCCGCuccuGGCCGCCGCccgacGCCc---- -3'
miRNA:   3'- -GGUuGGUG----CCGGCGGCGu----UGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 121906 0.66 0.962327
Target:  5'- aUCGACCGgGGCgCGgCGCGGCgggGAGg -3'
miRNA:   3'- -GGUUGGUgCCG-GCgGCGUUGgaaUUC- -5'
24731 5' -54.2 NC_005264.1 + 75334 0.66 0.962327
Target:  5'- aUCGAUCGCGGa-GCCGCAACg----- -3'
miRNA:   3'- -GGUUGGUGCCggCGGCGUUGgaauuc -5'
24731 5' -54.2 NC_005264.1 + 87418 0.66 0.962327
Target:  5'- -gAAUCACGGcCCGCCGUAcacuGCCc---- -3'
miRNA:   3'- ggUUGGUGCC-GGCGGCGU----UGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 91898 0.66 0.961982
Target:  5'- -uGGCCGCGGCagcgaugggcgggCGCgGCGACCa---- -3'
miRNA:   3'- ggUUGGUGCCG-------------GCGgCGUUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 105345 0.66 0.96022
Target:  5'- gCC-GCCGCGcgcgccagcaucuucGCCGCCGCcGCCa---- -3'
miRNA:   3'- -GGuUGGUGC---------------CGGCGGCGuUGGaauuc -5'
24731 5' -54.2 NC_005264.1 + 147892 0.66 0.958771
Target:  5'- -uGGCCuccagguCGGCUGCCGCGuagacGCCUUc-- -3'
miRNA:   3'- ggUUGGu------GCCGGCGGCGU-----UGGAAuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.