Results 21 - 40 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24732 | 3' | -53.6 | NC_005264.1 | + | 110331 | 0.66 | 0.972318 |
Target: 5'- gCCUGuuCgACGGCgUGCAGCCUUcaguagaccaGUUCGa -3' miRNA: 3'- -GGACuuG-UGCCG-AUGUCGGAG----------UAGGC- -5' |
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24732 | 3' | -53.6 | NC_005264.1 | + | 104871 | 0.68 | 0.933531 |
Target: 5'- aUUGGAUGCGGCaGCuuuccgggaacaGGCCUCAggCCGa -3' miRNA: 3'- gGACUUGUGCCGaUG------------UCGGAGUa-GGC- -5' |
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24732 | 3' | -53.6 | NC_005264.1 | + | 103060 | 0.66 | 0.974999 |
Target: 5'- --cGGACACGGCcguggACAGCCaCggCCa -3' miRNA: 3'- ggaCUUGUGCCGa----UGUCGGaGuaGGc -5' |
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24732 | 3' | -53.6 | NC_005264.1 | + | 99890 | 0.66 | 0.969137 |
Target: 5'- gUCUGAccccgaacaaaagGCGCGGCuUGCGGCCgcgCAagcCCGc -3' miRNA: 3'- -GGACU-------------UGUGCCG-AUGUCGGa--GUa--GGC- -5' |
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24732 | 3' | -53.6 | NC_005264.1 | + | 92428 | 0.66 | 0.974999 |
Target: 5'- aCCUGAACgaGCcGC-ACGGUCUCGUCa- -3' miRNA: 3'- -GGACUUG--UGcCGaUGUCGGAGUAGgc -5' |
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24732 | 3' | -53.6 | NC_005264.1 | + | 84320 | 0.68 | 0.933531 |
Target: 5'- aCC-GGGCACGGCgcgaugguUACuGGCCUCA-CCGc -3' miRNA: 3'- -GGaCUUGUGCCG--------AUG-UCGGAGUaGGC- -5' |
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24732 | 3' | -53.6 | NC_005264.1 | + | 77282 | 0.66 | 0.963043 |
Target: 5'- gCCUGGaacgaauuggguGCGCGGCagaUAguGUCUCGUUCa -3' miRNA: 3'- -GGACU------------UGUGCCG---AUguCGGAGUAGGc -5' |
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24732 | 3' | -53.6 | NC_005264.1 | + | 76298 | 0.7 | 0.839889 |
Target: 5'- aUCUGGGCGCgggggGGCUGCuGgCUCAUUCGc -3' miRNA: 3'- -GGACUUGUG-----CCGAUGuCgGAGUAGGC- -5' |
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24732 | 3' | -53.6 | NC_005264.1 | + | 74118 | 0.71 | 0.805592 |
Target: 5'- gCUGu-CGCGGCUGgGGuCCUCAUgCGg -3' miRNA: 3'- gGACuuGUGCCGAUgUC-GGAGUAgGC- -5' |
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24732 | 3' | -53.6 | NC_005264.1 | + | 70021 | 0.66 | 0.972318 |
Target: 5'- uCCUucuuCuuGGCUucacugGCGGCCUCGUCCu -3' miRNA: 3'- -GGAcuu-GugCCGA------UGUCGGAGUAGGc -5' |
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24732 | 3' | -53.6 | NC_005264.1 | + | 68498 | 0.66 | 0.972318 |
Target: 5'- --cGAACGCGGCgACGGCUU--UCUGg -3' miRNA: 3'- ggaCUUGUGCCGaUGUCGGAguAGGC- -5' |
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24732 | 3' | -53.6 | NC_005264.1 | + | 68428 | 0.68 | 0.922957 |
Target: 5'- cUCUGGACuacCGGCgccGCGGCCUgAUCa- -3' miRNA: 3'- -GGACUUGu--GCCGa--UGUCGGAgUAGgc -5' |
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24732 | 3' | -53.6 | NC_005264.1 | + | 65178 | 0.71 | 0.831582 |
Target: 5'- cUCUGGcCAUGGCcGCGGCCUUuucgCCGa -3' miRNA: 3'- -GGACUuGUGCCGaUGUCGGAGua--GGC- -5' |
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24732 | 3' | -53.6 | NC_005264.1 | + | 57908 | 0.67 | 0.955772 |
Target: 5'- gCUUG-GCACGGCUggggguuccGCcGCCUUGUCUGa -3' miRNA: 3'- -GGACuUGUGCCGA---------UGuCGGAGUAGGC- -5' |
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24732 | 3' | -53.6 | NC_005264.1 | + | 57298 | 0.7 | 0.855921 |
Target: 5'- uCCUGAGCuaGCGGCacuCAGCgaucgCAUCCGc -3' miRNA: 3'- -GGACUUG--UGCCGau-GUCGga---GUAGGC- -5' |
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24732 | 3' | -53.6 | NC_005264.1 | + | 57132 | 0.66 | 0.969436 |
Target: 5'- aCCUGGGCGCGGacgUAGgCUgGUCUGu -3' miRNA: 3'- -GGACUUGUGCCgauGUCgGAgUAGGC- -5' |
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24732 | 3' | -53.6 | NC_005264.1 | + | 55833 | 0.67 | 0.95952 |
Target: 5'- -gUGGcgGCGCGGCUGacugGGCCUCAgggcuUCUGg -3' miRNA: 3'- ggACU--UGUGCCGAUg---UCGGAGU-----AGGC- -5' |
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24732 | 3' | -53.6 | NC_005264.1 | + | 55169 | 0.68 | 0.927835 |
Target: 5'- cCCUGAACcgcgucuacgagaACGGCaacuauUACAGCCgCGUCUu -3' miRNA: 3'- -GGACUUG-------------UGCCG------AUGUCGGaGUAGGc -5' |
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24732 | 3' | -53.6 | NC_005264.1 | + | 51766 | 0.7 | 0.839889 |
Target: 5'- cUCUGAaggggagcucGCGCGGCgGCA-CUUCGUCCGg -3' miRNA: 3'- -GGACU----------UGUGCCGaUGUcGGAGUAGGC- -5' |
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24732 | 3' | -53.6 | NC_005264.1 | + | 46280 | 0.66 | 0.969436 |
Target: 5'- gCUGAGCGCc---GCAGCucgCUCAUCCGg -3' miRNA: 3'- gGACUUGUGccgaUGUCG---GAGUAGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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