miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24732 5' -56.6 NC_005264.1 + 86436 0.66 0.866946
Target:  5'- -cCGGGCGCCcUAugUGCcacGCCCu--- -3'
miRNA:   3'- auGCCCGCGGuGUugACG---UGGGuauu -5'
24732 5' -56.6 NC_005264.1 + 95483 0.66 0.866946
Target:  5'- cGCGGGCGCUACGuuuucCGCCCu--- -3'
miRNA:   3'- aUGCCCGCGGUGUugac-GUGGGuauu -5'
24732 5' -56.6 NC_005264.1 + 72460 0.66 0.866946
Target:  5'- gGCGGGCGCCGCcggucgGAUcgUGUACCgGc-- -3'
miRNA:   3'- aUGCCCGCGGUG------UUG--ACGUGGgUauu -5'
24732 5' -56.6 NC_005264.1 + 138810 0.66 0.866946
Target:  5'- gACGuGCGUCACGACUGUguagACCCu--- -3'
miRNA:   3'- aUGCcCGCGGUGUUGACG----UGGGuauu -5'
24732 5' -56.6 NC_005264.1 + 95202 0.66 0.866946
Target:  5'- gACGGGcCGCgCAgGACaccccUGCGCCCGc-- -3'
miRNA:   3'- aUGCCC-GCG-GUgUUG-----ACGUGGGUauu -5'
24732 5' -56.6 NC_005264.1 + 36527 0.66 0.866946
Target:  5'- gGCGGGCGCaggagccauCGGCcgcGCGCCCGa-- -3'
miRNA:   3'- aUGCCCGCGgu-------GUUGa--CGUGGGUauu -5'
24732 5' -56.6 NC_005264.1 + 142935 0.66 0.859242
Target:  5'- cAC-GGCGCCACcACaaaGCACCCGa-- -3'
miRNA:   3'- aUGcCCGCGGUGuUGa--CGUGGGUauu -5'
24732 5' -56.6 NC_005264.1 + 45412 0.66 0.859242
Target:  5'- gGCGGcgcccugcGCGCCGCGACaGC-CCCGa-- -3'
miRNA:   3'- aUGCC--------CGCGGUGUUGaCGuGGGUauu -5'
24732 5' -56.6 NC_005264.1 + 42069 0.66 0.859242
Target:  5'- cGCGGcGCGUgGCGucaGCUGCGCCgGg-- -3'
miRNA:   3'- aUGCC-CGCGgUGU---UGACGUGGgUauu -5'
24732 5' -56.6 NC_005264.1 + 15592 0.66 0.856889
Target:  5'- uUGCGGGCGCagcuGCGGCUccggcauaucucucGUGCCCAc-- -3'
miRNA:   3'- -AUGCCCGCGg---UGUUGA--------------CGUGGGUauu -5'
24732 5' -56.6 NC_005264.1 + 23711 0.66 0.851326
Target:  5'- cGCGGGC-CaCACGAacaauCUGCugCCGUGu -3'
miRNA:   3'- aUGCCCGcG-GUGUU-----GACGugGGUAUu -5'
24732 5' -56.6 NC_005264.1 + 76098 0.66 0.851326
Target:  5'- cUACGGGCGCgaACAGCgcgGCAUCa---- -3'
miRNA:   3'- -AUGCCCGCGg-UGUUGa--CGUGGguauu -5'
24732 5' -56.6 NC_005264.1 + 26158 0.66 0.851326
Target:  5'- aACGGGa-CCACAcccucGgUGCACCCAUu- -3'
miRNA:   3'- aUGCCCgcGGUGU-----UgACGUGGGUAuu -5'
24732 5' -56.6 NC_005264.1 + 2429 0.66 0.843204
Target:  5'- aGCuGGGCGCacaGCAGcCUGCACUCu--- -3'
miRNA:   3'- aUG-CCCGCGg--UGUU-GACGUGGGuauu -5'
24732 5' -56.6 NC_005264.1 + 130798 0.66 0.843204
Target:  5'- -cCGGGCGCCugG-CUcGCACUCcgGGg -3'
miRNA:   3'- auGCCCGCGGugUuGA-CGUGGGuaUU- -5'
24732 5' -56.6 NC_005264.1 + 79402 0.66 0.843204
Target:  5'- cGCGGGCguggcgagGCCGCGGCggaACCCAg-- -3'
miRNA:   3'- aUGCCCG--------CGGUGUUGacgUGGGUauu -5'
24732 5' -56.6 NC_005264.1 + 11772 0.66 0.843204
Target:  5'- -cCGGGCGCCugG-CUcGCACUCcgGGg -3'
miRNA:   3'- auGCCCGCGGugUuGA-CGUGGGuaUU- -5'
24732 5' -56.6 NC_005264.1 + 30252 0.66 0.843204
Target:  5'- aGC-GGUGCCAC-GCUGCACCgAa-- -3'
miRNA:   3'- aUGcCCGCGGUGuUGACGUGGgUauu -5'
24732 5' -56.6 NC_005264.1 + 17893 0.66 0.834884
Target:  5'- cUACGGcGCGCacaGCAGCUGaucaGCCCc--- -3'
miRNA:   3'- -AUGCC-CGCGg--UGUUGACg---UGGGuauu -5'
24732 5' -56.6 NC_005264.1 + 5789 0.66 0.826372
Target:  5'- aACuGGCGCCACGuCUguucGCGCCUGUAc -3'
miRNA:   3'- aUGcCCGCGGUGUuGA----CGUGGGUAUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.