Results 21 - 40 of 74 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24732 | 5' | -56.6 | NC_005264.1 | + | 67360 | 0.67 | 0.799776 |
Target: 5'- gGCGGaaaacguaGCGcCCGCGcucGCUGCGCCCGc-- -3' miRNA: 3'- aUGCC--------CGC-GGUGU---UGACGUGGGUauu -5' |
|||||||
24732 | 5' | -56.6 | NC_005264.1 | + | 19090 | 0.67 | 0.817678 |
Target: 5'- --aGGGaGCCAgGACUGCACCgCGg-- -3' miRNA: 3'- augCCCgCGGUgUUGACGUGG-GUauu -5' |
|||||||
24732 | 5' | -56.6 | NC_005264.1 | + | 97436 | 0.67 | 0.780304 |
Target: 5'- cUGCGGGCGCCGCcgcggaucugauaGACguaGCGCCg---- -3' miRNA: 3'- -AUGCCCGCGGUG-------------UUGa--CGUGGguauu -5' |
|||||||
24732 | 5' | -56.6 | NC_005264.1 | + | 55572 | 0.67 | 0.789657 |
Target: 5'- aGCGcGGC-CCACugcagcgGACaUGCGCCCGUGAa -3' miRNA: 3'- aUGC-CCGcGGUG-------UUG-ACGUGGGUAUU- -5' |
|||||||
24732 | 5' | -56.6 | NC_005264.1 | + | 127031 | 0.67 | 0.812378 |
Target: 5'- uUGCGGGgccggcagaggcgccCGCCACGACgGCGCCa---- -3' miRNA: 3'- -AUGCCC---------------GCGGUGUUGaCGUGGguauu -5' |
|||||||
24732 | 5' | -56.6 | NC_005264.1 | + | 158121 | 0.67 | 0.790585 |
Target: 5'- gGCGGGCaGCgGCGucuggaccaGCUGCugUCGUGGa -3' miRNA: 3'- aUGCCCG-CGgUGU---------UGACGugGGUAUU- -5' |
|||||||
24732 | 5' | -56.6 | NC_005264.1 | + | 107661 | 0.67 | 0.817678 |
Target: 5'- cGCGGuCGCCGCcuucAGCcGCGCCCAg-- -3' miRNA: 3'- aUGCCcGCGGUG----UUGaCGUGGGUauu -5' |
|||||||
24732 | 5' | -56.6 | NC_005264.1 | + | 104816 | 0.67 | 0.817678 |
Target: 5'- aGCGGGCGCCGCAcgacggcCUGUccGCCgGg-- -3' miRNA: 3'- aUGCCCGCGGUGUu------GACG--UGGgUauu -5' |
|||||||
24732 | 5' | -56.6 | NC_005264.1 | + | 8004 | 0.67 | 0.812378 |
Target: 5'- uUGCGGGgccggcagaggcgccCGCCACGACgGCGCCa---- -3' miRNA: 3'- -AUGCCC---------------GCGGUGUUGaCGUGGguauu -5' |
|||||||
24732 | 5' | -56.6 | NC_005264.1 | + | 39094 | 0.67 | 0.790585 |
Target: 5'- gGCGGGCaGCgGCGucuggaccaGCUGCugUCGUGGa -3' miRNA: 3'- aUGCCCG-CGgUGU---------UGACGugGGUAUU- -5' |
|||||||
24732 | 5' | -56.6 | NC_005264.1 | + | 86651 | 0.67 | 0.790585 |
Target: 5'- -uUGGGCGCCGCGGggGaCACCCu--- -3' miRNA: 3'- auGCCCGCGGUGUUgaC-GUGGGuauu -5' |
|||||||
24732 | 5' | -56.6 | NC_005264.1 | + | 55606 | 0.67 | 0.781246 |
Target: 5'- cAUGGGaaaGCCGCGGCUGgCGCCgAa-- -3' miRNA: 3'- aUGCCCg--CGGUGUUGAC-GUGGgUauu -5' |
|||||||
24732 | 5' | -56.6 | NC_005264.1 | + | 154987 | 0.67 | 0.781246 |
Target: 5'- -gUGGGgGCCucGCAGCUGUACCuCAa-- -3' miRNA: 3'- auGCCCgCGG--UGUUGACGUGG-GUauu -5' |
|||||||
24732 | 5' | -56.6 | NC_005264.1 | + | 58722 | 0.67 | 0.781246 |
Target: 5'- gGCGGGCgGCCACcaggggGAC-GuCGCCCAUGu -3' miRNA: 3'- aUGCCCG-CGGUG------UUGaC-GUGGGUAUu -5' |
|||||||
24732 | 5' | -56.6 | NC_005264.1 | + | 83120 | 0.67 | 0.778416 |
Target: 5'- gACGGGCGCCaaggccgcggaggcGCGuCUGCcCUCAUGGu -3' miRNA: 3'- aUGCCCGCGG--------------UGUuGACGuGGGUAUU- -5' |
|||||||
24732 | 5' | -56.6 | NC_005264.1 | + | 44688 | 0.67 | 0.80881 |
Target: 5'- cAUGGGCgGCCACGGCauagaguucaUGUACCCc--- -3' miRNA: 3'- aUGCCCG-CGGUGUUG----------ACGUGGGuauu -5' |
|||||||
24732 | 5' | -56.6 | NC_005264.1 | + | 16612 | 0.68 | 0.762162 |
Target: 5'- -cCGGGCGCCACGACgccGCGgCgAUu- -3' miRNA: 3'- auGCCCGCGGUGUUGa--CGUgGgUAuu -5' |
|||||||
24732 | 5' | -56.6 | NC_005264.1 | + | 126433 | 0.68 | 0.732666 |
Target: 5'- cUugGGGCGCCucacguCAGCUagaugGCGCCUAg-- -3' miRNA: 3'- -AugCCCGCGGu-----GUUGA-----CGUGGGUauu -5' |
|||||||
24732 | 5' | -56.6 | NC_005264.1 | + | 33945 | 0.68 | 0.732666 |
Target: 5'- -gUGGcGCGCCGgGACcGCGCCCGa-- -3' miRNA: 3'- auGCC-CGCGGUgUUGaCGUGGGUauu -5' |
|||||||
24732 | 5' | -56.6 | NC_005264.1 | + | 71660 | 0.68 | 0.742601 |
Target: 5'- gUGCGuGGCGUaCACGuguuuGCUGCACCCcgGc -3' miRNA: 3'- -AUGC-CCGCG-GUGU-----UGACGUGGGuaUu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home