Results 1 - 20 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24732 | 5' | -56.6 | NC_005264.1 | + | 141519 | 1.04 | 0.004092 |
Target: 5'- cUACGGGCGCCACAACUGCACCCAUAAg -3' miRNA: 3'- -AUGCCCGCGGUGUUGACGUGGGUAUU- -5' |
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24732 | 5' | -56.6 | NC_005264.1 | + | 27947 | 0.78 | 0.239263 |
Target: 5'- aACGGGCGCCGCGuCUuccaaacaacggugcGCGCCCGUGGu -3' miRNA: 3'- aUGCCCGCGGUGUuGA---------------CGUGGGUAUU- -5' |
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24732 | 5' | -56.6 | NC_005264.1 | + | 46885 | 0.77 | 0.261253 |
Target: 5'- -uCGGGCGCCGCGuaccuccuaGCUGCGCCgCGUGu -3' miRNA: 3'- auGCCCGCGGUGU---------UGACGUGG-GUAUu -5' |
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24732 | 5' | -56.6 | NC_005264.1 | + | 94681 | 0.76 | 0.311575 |
Target: 5'- gGCGGGCGCCGCAacguucacauaACggccguggucaacgGCGCCCAUGc -3' miRNA: 3'- aUGCCCGCGGUGU-----------UGa-------------CGUGGGUAUu -5' |
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24732 | 5' | -56.6 | NC_005264.1 | + | 147246 | 0.74 | 0.395875 |
Target: 5'- aUGCcGGaGCCGCAGCUGCGCCCGc-- -3' miRNA: 3'- -AUGcCCgCGGUGUUGACGUGGGUauu -5' |
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24732 | 5' | -56.6 | NC_005264.1 | + | 28816 | 0.72 | 0.52717 |
Target: 5'- --aGGGCGCCugAGCccaugGUACCCAUu- -3' miRNA: 3'- augCCCGCGGugUUGa----CGUGGGUAuu -5' |
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24732 | 5' | -56.6 | NC_005264.1 | + | 100385 | 0.72 | 0.537229 |
Target: 5'- cUGCGGaUGCCGCuGCUGCGcCCCGUAu -3' miRNA: 3'- -AUGCCcGCGGUGuUGACGU-GGGUAUu -5' |
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24732 | 5' | -56.6 | NC_005264.1 | + | 152768 | 0.72 | 0.497443 |
Target: 5'- gGCGGGagauucCGCCGCGGCUGCAgUUAUGAu -3' miRNA: 3'- aUGCCC------GCGGUGUUGACGUgGGUAUU- -5' |
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24732 | 5' | -56.6 | NC_005264.1 | + | 35808 | 0.71 | 0.578057 |
Target: 5'- gGCGGGCGCCucugccggccccGCAAUgGCGgCCCGUGc -3' miRNA: 3'- aUGCCCGCGG------------UGUUGaCGU-GGGUAUu -5' |
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24732 | 5' | -56.6 | NC_005264.1 | + | 71883 | 0.71 | 0.598736 |
Target: 5'- cGCGGGCGCC-CGAC-GCAaacaCCGUGu -3' miRNA: 3'- aUGCCCGCGGuGUUGaCGUg---GGUAUu -5' |
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24732 | 5' | -56.6 | NC_005264.1 | + | 154834 | 0.71 | 0.578057 |
Target: 5'- gGCGGGCGCCucugccggccccGCAAUgGCGgCCCGUGc -3' miRNA: 3'- aUGCCCGCGG------------UGUUGaCGU-GGGUAUu -5' |
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24732 | 5' | -56.6 | NC_005264.1 | + | 61261 | 0.71 | 0.547353 |
Target: 5'- cACGGcGCGCCuCGGC-GUACCCGUAu -3' miRNA: 3'- aUGCC-CGCGGuGUUGaCGUGGGUAUu -5' |
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24732 | 5' | -56.6 | NC_005264.1 | + | 134877 | 0.71 | 0.567773 |
Target: 5'- cACGGGCGCgCACcguuguuuggaaGACgcgGCGCCCGUu- -3' miRNA: 3'- aUGCCCGCG-GUG------------UUGa--CGUGGGUAuu -5' |
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24732 | 5' | -56.6 | NC_005264.1 | + | 124314 | 0.7 | 0.609118 |
Target: 5'- gGCGGG-GCgGCGGCUG-ACCCGUGGg -3' miRNA: 3'- aUGCCCgCGgUGUUGACgUGGGUAUU- -5' |
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24732 | 5' | -56.6 | NC_005264.1 | + | 5287 | 0.7 | 0.609118 |
Target: 5'- gGCGGG-GCgGCGGCUG-ACCCGUGGg -3' miRNA: 3'- aUGCCCgCGgUGUUGACgUGGGUAUU- -5' |
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24732 | 5' | -56.6 | NC_005264.1 | + | 74396 | 0.7 | 0.639298 |
Target: 5'- aGCGGGCGUCgaACAgguucugGCUGCgggaGCCCAUGu -3' miRNA: 3'- aUGCCCGCGG--UGU-------UGACG----UGGGUAUu -5' |
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24732 | 5' | -56.6 | NC_005264.1 | + | 85781 | 0.7 | 0.650744 |
Target: 5'- cGCGGGgGCUGuuaagcuugauCAACUGCACCCu--- -3' miRNA: 3'- aUGCCCgCGGU-----------GUUGACGUGGGuauu -5' |
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24732 | 5' | -56.6 | NC_005264.1 | + | 55904 | 0.7 | 0.639298 |
Target: 5'- cUGCGGcCGCCGCAGCUGUcgaggaaaaagugACCCGg-- -3' miRNA: 3'- -AUGCCcGCGGUGUUGACG-------------UGGGUauu -5' |
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24732 | 5' | -56.6 | NC_005264.1 | + | 125539 | 0.7 | 0.650744 |
Target: 5'- gGCGGGUguuGCUGCGGCUGCGgCgCAUAAa -3' miRNA: 3'- aUGCCCG---CGGUGUUGACGUgG-GUAUU- -5' |
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24732 | 5' | -56.6 | NC_005264.1 | + | 110148 | 0.69 | 0.685952 |
Target: 5'- gGCGGGCggcgaaacccGCCGCGGCUuuggggccuauccugGCAUCCGUAc -3' miRNA: 3'- aUGCCCG----------CGGUGUUGA---------------CGUGGGUAUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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