miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24732 5' -56.6 NC_005264.1 + 141519 1.04 0.004092
Target:  5'- cUACGGGCGCCACAACUGCACCCAUAAg -3'
miRNA:   3'- -AUGCCCGCGGUGUUGACGUGGGUAUU- -5'
24732 5' -56.6 NC_005264.1 + 27947 0.78 0.239263
Target:  5'- aACGGGCGCCGCGuCUuccaaacaacggugcGCGCCCGUGGu -3'
miRNA:   3'- aUGCCCGCGGUGUuGA---------------CGUGGGUAUU- -5'
24732 5' -56.6 NC_005264.1 + 46885 0.77 0.261253
Target:  5'- -uCGGGCGCCGCGuaccuccuaGCUGCGCCgCGUGu -3'
miRNA:   3'- auGCCCGCGGUGU---------UGACGUGG-GUAUu -5'
24732 5' -56.6 NC_005264.1 + 94681 0.76 0.311575
Target:  5'- gGCGGGCGCCGCAacguucacauaACggccguggucaacgGCGCCCAUGc -3'
miRNA:   3'- aUGCCCGCGGUGU-----------UGa-------------CGUGGGUAUu -5'
24732 5' -56.6 NC_005264.1 + 147246 0.74 0.395875
Target:  5'- aUGCcGGaGCCGCAGCUGCGCCCGc-- -3'
miRNA:   3'- -AUGcCCgCGGUGUUGACGUGGGUauu -5'
24732 5' -56.6 NC_005264.1 + 152768 0.72 0.497443
Target:  5'- gGCGGGagauucCGCCGCGGCUGCAgUUAUGAu -3'
miRNA:   3'- aUGCCC------GCGGUGUUGACGUgGGUAUU- -5'
24732 5' -56.6 NC_005264.1 + 28816 0.72 0.52717
Target:  5'- --aGGGCGCCugAGCccaugGUACCCAUu- -3'
miRNA:   3'- augCCCGCGGugUUGa----CGUGGGUAuu -5'
24732 5' -56.6 NC_005264.1 + 100385 0.72 0.537229
Target:  5'- cUGCGGaUGCCGCuGCUGCGcCCCGUAu -3'
miRNA:   3'- -AUGCCcGCGGUGuUGACGU-GGGUAUu -5'
24732 5' -56.6 NC_005264.1 + 61261 0.71 0.547353
Target:  5'- cACGGcGCGCCuCGGC-GUACCCGUAu -3'
miRNA:   3'- aUGCC-CGCGGuGUUGaCGUGGGUAUu -5'
24732 5' -56.6 NC_005264.1 + 134877 0.71 0.567773
Target:  5'- cACGGGCGCgCACcguuguuuggaaGACgcgGCGCCCGUu- -3'
miRNA:   3'- aUGCCCGCG-GUG------------UUGa--CGUGGGUAuu -5'
24732 5' -56.6 NC_005264.1 + 35808 0.71 0.578057
Target:  5'- gGCGGGCGCCucugccggccccGCAAUgGCGgCCCGUGc -3'
miRNA:   3'- aUGCCCGCGG------------UGUUGaCGU-GGGUAUu -5'
24732 5' -56.6 NC_005264.1 + 154834 0.71 0.578057
Target:  5'- gGCGGGCGCCucugccggccccGCAAUgGCGgCCCGUGc -3'
miRNA:   3'- aUGCCCGCGG------------UGUUGaCGU-GGGUAUu -5'
24732 5' -56.6 NC_005264.1 + 71883 0.71 0.598736
Target:  5'- cGCGGGCGCC-CGAC-GCAaacaCCGUGu -3'
miRNA:   3'- aUGCCCGCGGuGUUGaCGUg---GGUAUu -5'
24732 5' -56.6 NC_005264.1 + 124314 0.7 0.609118
Target:  5'- gGCGGG-GCgGCGGCUG-ACCCGUGGg -3'
miRNA:   3'- aUGCCCgCGgUGUUGACgUGGGUAUU- -5'
24732 5' -56.6 NC_005264.1 + 5287 0.7 0.609118
Target:  5'- gGCGGG-GCgGCGGCUG-ACCCGUGGg -3'
miRNA:   3'- aUGCCCgCGgUGUUGACgUGGGUAUU- -5'
24732 5' -56.6 NC_005264.1 + 74396 0.7 0.639298
Target:  5'- aGCGGGCGUCgaACAgguucugGCUGCgggaGCCCAUGu -3'
miRNA:   3'- aUGCCCGCGG--UGU-------UGACG----UGGGUAUu -5'
24732 5' -56.6 NC_005264.1 + 55904 0.7 0.639298
Target:  5'- cUGCGGcCGCCGCAGCUGUcgaggaaaaagugACCCGg-- -3'
miRNA:   3'- -AUGCCcGCGGUGUUGACG-------------UGGGUauu -5'
24732 5' -56.6 NC_005264.1 + 125539 0.7 0.650744
Target:  5'- gGCGGGUguuGCUGCGGCUGCGgCgCAUAAa -3'
miRNA:   3'- aUGCCCG---CGGUGUUGACGUgG-GUAUU- -5'
24732 5' -56.6 NC_005264.1 + 85781 0.7 0.650744
Target:  5'- cGCGGGgGCUGuuaagcuugauCAACUGCACCCu--- -3'
miRNA:   3'- aUGCCCgCGGU-----------GUUGACGUGGGuauu -5'
24732 5' -56.6 NC_005264.1 + 23289 0.69 0.661133
Target:  5'- aACGGGUuuccaggaaaGCCGCGAUcGUGCCCAUGc -3'
miRNA:   3'- aUGCCCG----------CGGUGUUGaCGUGGGUAUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.