Results 21 - 40 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24732 | 5' | -56.6 | NC_005264.1 | + | 88060 | 0.69 | 0.661133 |
Target: 5'- aUACGGGCGCCAUcuuacauguAUUGCGCCa---- -3' miRNA: 3'- -AUGCCCGCGGUGu--------UGACGUGGguauu -5' |
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24732 | 5' | -56.6 | NC_005264.1 | + | 116292 | 0.69 | 0.671498 |
Target: 5'- cGCGGGCgGCUACGGCUGUGgCCu--- -3' miRNA: 3'- aUGCCCG-CGGUGUUGACGUgGGuauu -5' |
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24732 | 5' | -56.6 | NC_005264.1 | + | 68261 | 0.69 | 0.68183 |
Target: 5'- cGCGGGCgGCCu--GCUGCugCCGc-- -3' miRNA: 3'- aUGCCCG-CGGuguUGACGugGGUauu -5' |
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24732 | 5' | -56.6 | NC_005264.1 | + | 61921 | 0.69 | 0.68183 |
Target: 5'- cACGGGCGCCGCcGCUuGCGCg----- -3' miRNA: 3'- aUGCCCGCGGUGuUGA-CGUGgguauu -5' |
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24732 | 5' | -56.6 | NC_005264.1 | + | 26376 | 0.69 | 0.68183 |
Target: 5'- cUGCGcGGCGCCgucucugagcGCGGCcucaGCGCCCAUGc -3' miRNA: 3'- -AUGC-CCGCGG----------UGUUGa---CGUGGGUAUu -5' |
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24732 | 5' | -56.6 | NC_005264.1 | + | 110148 | 0.69 | 0.685952 |
Target: 5'- gGCGGGCggcgaaacccGCCGCGGCUuuggggccuauccugGCAUCCGUAc -3' miRNA: 3'- aUGCCCG----------CGGUGUUGA---------------CGUGGGUAUu -5' |
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24732 | 5' | -56.6 | NC_005264.1 | + | 142703 | 0.69 | 0.69212 |
Target: 5'- gGCGGcGCGCCACGcCUGC-CCgCAUc- -3' miRNA: 3'- aUGCC-CGCGGUGUuGACGuGG-GUAuu -5' |
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24732 | 5' | -56.6 | NC_005264.1 | + | 32566 | 0.69 | 0.712535 |
Target: 5'- cGCGGuagcCGCCGCAACgucgcGCACCCGc-- -3' miRNA: 3'- aUGCCc---GCGGUGUUGa----CGUGGGUauu -5' |
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24732 | 5' | -56.6 | NC_005264.1 | + | 67183 | 0.68 | 0.722641 |
Target: 5'- gGCGGccugcaGCGCUAUGACgcgGCGCCUAUAGu -3' miRNA: 3'- aUGCC------CGCGGUGUUGa--CGUGGGUAUU- -5' |
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24732 | 5' | -56.6 | NC_005264.1 | + | 33945 | 0.68 | 0.732666 |
Target: 5'- -gUGGcGCGCCGgGACcGCGCCCGa-- -3' miRNA: 3'- auGCC-CGCGGUgUUGaCGUGGGUauu -5' |
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24732 | 5' | -56.6 | NC_005264.1 | + | 126433 | 0.68 | 0.732666 |
Target: 5'- cUugGGGCGCCucacguCAGCUagaugGCGCCUAg-- -3' miRNA: 3'- -AugCCCGCGGu-----GUUGA-----CGUGGGUauu -5' |
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24732 | 5' | -56.6 | NC_005264.1 | + | 152972 | 0.68 | 0.732666 |
Target: 5'- -gUGGcGCGCCGgGACcGCGCCCGa-- -3' miRNA: 3'- auGCC-CGCGGUgUUGaCGUGGGUauu -5' |
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24732 | 5' | -56.6 | NC_005264.1 | + | 159392 | 0.68 | 0.742601 |
Target: 5'- -cCGGGCGCCACgGGCgGCggACCCcUGAg -3' miRNA: 3'- auGCCCGCGGUG-UUGaCG--UGGGuAUU- -5' |
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24732 | 5' | -56.6 | NC_005264.1 | + | 71660 | 0.68 | 0.742601 |
Target: 5'- gUGCGuGGCGUaCACGuguuuGCUGCACCCcgGc -3' miRNA: 3'- -AUGC-CCGCG-GUGU-----UGACGUGGGuaUu -5' |
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24732 | 5' | -56.6 | NC_005264.1 | + | 62452 | 0.68 | 0.742601 |
Target: 5'- aUACgGGGCGCaGCAGCgGCAUCCGc-- -3' miRNA: 3'- -AUG-CCCGCGgUGUUGaCGUGGGUauu -5' |
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24732 | 5' | -56.6 | NC_005264.1 | + | 20148 | 0.68 | 0.752436 |
Target: 5'- gAUGGcGCGCCGCcg--GCGCCCAa-- -3' miRNA: 3'- aUGCC-CGCGGUGuugaCGUGGGUauu -5' |
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24732 | 5' | -56.6 | NC_005264.1 | + | 16612 | 0.68 | 0.762162 |
Target: 5'- -cCGGGCGCCACGACgccGCGgCgAUu- -3' miRNA: 3'- auGCCCGCGGUGUUGa--CGUgGgUAuu -5' |
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24732 | 5' | -56.6 | NC_005264.1 | + | 127924 | 0.68 | 0.775575 |
Target: 5'- gGCGGGCGCCACugggccaguaaccCUGC-CCUcgAAg -3' miRNA: 3'- aUGCCCGCGGUGuu-----------GACGuGGGuaUU- -5' |
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24732 | 5' | -56.6 | NC_005264.1 | + | 83120 | 0.67 | 0.778416 |
Target: 5'- gACGGGCGCCaaggccgcggaggcGCGuCUGCcCUCAUGGu -3' miRNA: 3'- aUGCCCGCGG--------------UGUuGACGuGGGUAUU- -5' |
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24732 | 5' | -56.6 | NC_005264.1 | + | 97436 | 0.67 | 0.780304 |
Target: 5'- cUGCGGGCGCCGCcgcggaucugauaGACguaGCGCCg---- -3' miRNA: 3'- -AUGCCCGCGGUG-------------UUGa--CGUGGguauu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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