miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24732 5' -56.6 NC_005264.1 + 19090 0.67 0.817678
Target:  5'- --aGGGaGCCAgGACUGCACCgCGg-- -3'
miRNA:   3'- augCCCgCGGUgUUGACGUGG-GUauu -5'
24732 5' -56.6 NC_005264.1 + 107661 0.67 0.817678
Target:  5'- cGCGGuCGCCGCcuucAGCcGCGCCCAg-- -3'
miRNA:   3'- aUGCCcGCGGUG----UUGaCGUGGGUauu -5'
24732 5' -56.6 NC_005264.1 + 104816 0.67 0.817678
Target:  5'- aGCGGGCGCCGCAcgacggcCUGUccGCCgGg-- -3'
miRNA:   3'- aUGCCCGCGGUGUu------GACG--UGGgUauu -5'
24732 5' -56.6 NC_005264.1 + 8004 0.67 0.812378
Target:  5'- uUGCGGGgccggcagaggcgccCGCCACGACgGCGCCa---- -3'
miRNA:   3'- -AUGCCC---------------GCGGUGUUGaCGUGGguauu -5'
24732 5' -56.6 NC_005264.1 + 127031 0.67 0.812378
Target:  5'- uUGCGGGgccggcagaggcgccCGCCACGACgGCGCCa---- -3'
miRNA:   3'- -AUGCCC---------------GCGGUGUUGaCGUGGguauu -5'
24732 5' -56.6 NC_005264.1 + 44688 0.67 0.80881
Target:  5'- cAUGGGCgGCCACGGCauagaguucaUGUACCCc--- -3'
miRNA:   3'- aUGCCCG-CGGUGUUG----------ACGUGGGuauu -5'
24732 5' -56.6 NC_005264.1 + 67360 0.67 0.799776
Target:  5'- gGCGGaaaacguaGCGcCCGCGcucGCUGCGCCCGc-- -3'
miRNA:   3'- aUGCC--------CGC-GGUGU---UGACGUGGGUauu -5'
24732 5' -56.6 NC_005264.1 + 86651 0.67 0.790585
Target:  5'- -uUGGGCGCCGCGGggGaCACCCu--- -3'
miRNA:   3'- auGCCCGCGGUGUUgaC-GUGGGuauu -5'
24732 5' -56.6 NC_005264.1 + 158121 0.67 0.790585
Target:  5'- gGCGGGCaGCgGCGucuggaccaGCUGCugUCGUGGa -3'
miRNA:   3'- aUGCCCG-CGgUGU---------UGACGugGGUAUU- -5'
24732 5' -56.6 NC_005264.1 + 39094 0.67 0.790585
Target:  5'- gGCGGGCaGCgGCGucuggaccaGCUGCugUCGUGGa -3'
miRNA:   3'- aUGCCCG-CGgUGU---------UGACGugGGUAUU- -5'
24732 5' -56.6 NC_005264.1 + 55572 0.67 0.789657
Target:  5'- aGCGcGGC-CCACugcagcgGACaUGCGCCCGUGAa -3'
miRNA:   3'- aUGC-CCGcGGUG-------UUG-ACGUGGGUAUU- -5'
24732 5' -56.6 NC_005264.1 + 58722 0.67 0.781246
Target:  5'- gGCGGGCgGCCACcaggggGAC-GuCGCCCAUGu -3'
miRNA:   3'- aUGCCCG-CGGUG------UUGaC-GUGGGUAUu -5'
24732 5' -56.6 NC_005264.1 + 55606 0.67 0.781246
Target:  5'- cAUGGGaaaGCCGCGGCUGgCGCCgAa-- -3'
miRNA:   3'- aUGCCCg--CGGUGUUGAC-GUGGgUauu -5'
24732 5' -56.6 NC_005264.1 + 154987 0.67 0.781246
Target:  5'- -gUGGGgGCCucGCAGCUGUACCuCAa-- -3'
miRNA:   3'- auGCCCgCGG--UGUUGACGUGG-GUauu -5'
24732 5' -56.6 NC_005264.1 + 97436 0.67 0.780304
Target:  5'- cUGCGGGCGCCGCcgcggaucugauaGACguaGCGCCg---- -3'
miRNA:   3'- -AUGCCCGCGGUG-------------UUGa--CGUGGguauu -5'
24732 5' -56.6 NC_005264.1 + 83120 0.67 0.778416
Target:  5'- gACGGGCGCCaaggccgcggaggcGCGuCUGCcCUCAUGGu -3'
miRNA:   3'- aUGCCCGCGG--------------UGUuGACGuGGGUAUU- -5'
24732 5' -56.6 NC_005264.1 + 127924 0.68 0.775575
Target:  5'- gGCGGGCGCCACugggccaguaaccCUGC-CCUcgAAg -3'
miRNA:   3'- aUGCCCGCGGUGuu-----------GACGuGGGuaUU- -5'
24732 5' -56.6 NC_005264.1 + 16612 0.68 0.762162
Target:  5'- -cCGGGCGCCACGACgccGCGgCgAUu- -3'
miRNA:   3'- auGCCCGCGGUGUUGa--CGUgGgUAuu -5'
24732 5' -56.6 NC_005264.1 + 20148 0.68 0.752436
Target:  5'- gAUGGcGCGCCGCcg--GCGCCCAa-- -3'
miRNA:   3'- aUGCC-CGCGGUGuugaCGUGGGUauu -5'
24732 5' -56.6 NC_005264.1 + 159392 0.68 0.742601
Target:  5'- -cCGGGCGCCACgGGCgGCggACCCcUGAg -3'
miRNA:   3'- auGCCCGCGGUG-UUGaCG--UGGGuAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.