miRNA display CGI


Results 41 - 60 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24732 5' -56.6 NC_005264.1 + 159392 0.68 0.742601
Target:  5'- -cCGGGCGCCACgGGCgGCggACCCcUGAg -3'
miRNA:   3'- auGCCCGCGGUG-UUGaCG--UGGGuAUU- -5'
24732 5' -56.6 NC_005264.1 + 62452 0.68 0.742601
Target:  5'- aUACgGGGCGCaGCAGCgGCAUCCGc-- -3'
miRNA:   3'- -AUG-CCCGCGgUGUUGaCGUGGGUauu -5'
24732 5' -56.6 NC_005264.1 + 126433 0.68 0.732666
Target:  5'- cUugGGGCGCCucacguCAGCUagaugGCGCCUAg-- -3'
miRNA:   3'- -AugCCCGCGGu-----GUUGA-----CGUGGGUauu -5'
24732 5' -56.6 NC_005264.1 + 33945 0.68 0.732666
Target:  5'- -gUGGcGCGCCGgGACcGCGCCCGa-- -3'
miRNA:   3'- auGCC-CGCGGUgUUGaCGUGGGUauu -5'
24732 5' -56.6 NC_005264.1 + 152972 0.68 0.732666
Target:  5'- -gUGGcGCGCCGgGACcGCGCCCGa-- -3'
miRNA:   3'- auGCC-CGCGGUgUUGaCGUGGGUauu -5'
24732 5' -56.6 NC_005264.1 + 67183 0.68 0.722641
Target:  5'- gGCGGccugcaGCGCUAUGACgcgGCGCCUAUAGu -3'
miRNA:   3'- aUGCC------CGCGGUGUUGa--CGUGGGUAUU- -5'
24732 5' -56.6 NC_005264.1 + 32566 0.69 0.712535
Target:  5'- cGCGGuagcCGCCGCAACgucgcGCACCCGc-- -3'
miRNA:   3'- aUGCCc---GCGGUGUUGa----CGUGGGUauu -5'
24732 5' -56.6 NC_005264.1 + 142703 0.69 0.69212
Target:  5'- gGCGGcGCGCCACGcCUGC-CCgCAUc- -3'
miRNA:   3'- aUGCC-CGCGGUGUuGACGuGG-GUAuu -5'
24732 5' -56.6 NC_005264.1 + 110148 0.69 0.685952
Target:  5'- gGCGGGCggcgaaacccGCCGCGGCUuuggggccuauccugGCAUCCGUAc -3'
miRNA:   3'- aUGCCCG----------CGGUGUUGA---------------CGUGGGUAUu -5'
24732 5' -56.6 NC_005264.1 + 61921 0.69 0.68183
Target:  5'- cACGGGCGCCGCcGCUuGCGCg----- -3'
miRNA:   3'- aUGCCCGCGGUGuUGA-CGUGgguauu -5'
24732 5' -56.6 NC_005264.1 + 68261 0.69 0.68183
Target:  5'- cGCGGGCgGCCu--GCUGCugCCGc-- -3'
miRNA:   3'- aUGCCCG-CGGuguUGACGugGGUauu -5'
24732 5' -56.6 NC_005264.1 + 26376 0.69 0.68183
Target:  5'- cUGCGcGGCGCCgucucugagcGCGGCcucaGCGCCCAUGc -3'
miRNA:   3'- -AUGC-CCGCGG----------UGUUGa---CGUGGGUAUu -5'
24732 5' -56.6 NC_005264.1 + 116292 0.69 0.671498
Target:  5'- cGCGGGCgGCUACGGCUGUGgCCu--- -3'
miRNA:   3'- aUGCCCG-CGGUGUUGACGUgGGuauu -5'
24732 5' -56.6 NC_005264.1 + 88060 0.69 0.661133
Target:  5'- aUACGGGCGCCAUcuuacauguAUUGCGCCa---- -3'
miRNA:   3'- -AUGCCCGCGGUGu--------UGACGUGGguauu -5'
24732 5' -56.6 NC_005264.1 + 23289 0.69 0.661133
Target:  5'- aACGGGUuuccaggaaaGCCGCGAUcGUGCCCAUGc -3'
miRNA:   3'- aUGCCCG----------CGGUGUUGaCGUGGGUAUu -5'
24732 5' -56.6 NC_005264.1 + 85781 0.7 0.650744
Target:  5'- cGCGGGgGCUGuuaagcuugauCAACUGCACCCu--- -3'
miRNA:   3'- aUGCCCgCGGU-----------GUUGACGUGGGuauu -5'
24732 5' -56.6 NC_005264.1 + 125539 0.7 0.650744
Target:  5'- gGCGGGUguuGCUGCGGCUGCGgCgCAUAAa -3'
miRNA:   3'- aUGCCCG---CGGUGUUGACGUgG-GUAUU- -5'
24732 5' -56.6 NC_005264.1 + 55904 0.7 0.639298
Target:  5'- cUGCGGcCGCCGCAGCUGUcgaggaaaaagugACCCGg-- -3'
miRNA:   3'- -AUGCCcGCGGUGUUGACG-------------UGGGUauu -5'
24732 5' -56.6 NC_005264.1 + 74396 0.7 0.639298
Target:  5'- aGCGGGCGUCgaACAgguucugGCUGCgggaGCCCAUGu -3'
miRNA:   3'- aUGCCCGCGG--UGU-------UGACG----UGGGUAUu -5'
24732 5' -56.6 NC_005264.1 + 124314 0.7 0.609118
Target:  5'- gGCGGG-GCgGCGGCUG-ACCCGUGGg -3'
miRNA:   3'- aUGCCCgCGgUGUUGACgUGGGUAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.