miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24732 5' -56.6 NC_005264.1 + 2429 0.66 0.843204
Target:  5'- aGCuGGGCGCacaGCAGcCUGCACUCu--- -3'
miRNA:   3'- aUG-CCCGCGg--UGUU-GACGUGGGuauu -5'
24732 5' -56.6 NC_005264.1 + 5287 0.7 0.609118
Target:  5'- gGCGGG-GCgGCGGCUG-ACCCGUGGg -3'
miRNA:   3'- aUGCCCgCGgUGUUGACgUGGGUAUU- -5'
24732 5' -56.6 NC_005264.1 + 5789 0.66 0.826372
Target:  5'- aACuGGCGCCACGuCUguucGCGCCUGUAc -3'
miRNA:   3'- aUGcCCGCGGUGUuGA----CGUGGGUAUu -5'
24732 5' -56.6 NC_005264.1 + 8004 0.67 0.812378
Target:  5'- uUGCGGGgccggcagaggcgccCGCCACGACgGCGCCa---- -3'
miRNA:   3'- -AUGCCC---------------GCGGUGUUGaCGUGGguauu -5'
24732 5' -56.6 NC_005264.1 + 11772 0.66 0.843204
Target:  5'- -cCGGGCGCCugG-CUcGCACUCcgGGg -3'
miRNA:   3'- auGCCCGCGGugUuGA-CGUGGGuaUU- -5'
24732 5' -56.6 NC_005264.1 + 15592 0.66 0.856889
Target:  5'- uUGCGGGCGCagcuGCGGCUccggcauaucucucGUGCCCAc-- -3'
miRNA:   3'- -AUGCCCGCGg---UGUUGA--------------CGUGGGUauu -5'
24732 5' -56.6 NC_005264.1 + 16612 0.68 0.762162
Target:  5'- -cCGGGCGCCACGACgccGCGgCgAUu- -3'
miRNA:   3'- auGCCCGCGGUGUUGa--CGUgGgUAuu -5'
24732 5' -56.6 NC_005264.1 + 17893 0.66 0.834884
Target:  5'- cUACGGcGCGCacaGCAGCUGaucaGCCCc--- -3'
miRNA:   3'- -AUGCC-CGCGg--UGUUGACg---UGGGuauu -5'
24732 5' -56.6 NC_005264.1 + 19090 0.67 0.817678
Target:  5'- --aGGGaGCCAgGACUGCACCgCGg-- -3'
miRNA:   3'- augCCCgCGGUgUUGACGUGG-GUauu -5'
24732 5' -56.6 NC_005264.1 + 20148 0.68 0.752436
Target:  5'- gAUGGcGCGCCGCcg--GCGCCCAa-- -3'
miRNA:   3'- aUGCC-CGCGGUGuugaCGUGGGUauu -5'
24732 5' -56.6 NC_005264.1 + 23289 0.69 0.661133
Target:  5'- aACGGGUuuccaggaaaGCCGCGAUcGUGCCCAUGc -3'
miRNA:   3'- aUGCCCG----------CGGUGUUGaCGUGGGUAUu -5'
24732 5' -56.6 NC_005264.1 + 23711 0.66 0.851326
Target:  5'- cGCGGGC-CaCACGAacaauCUGCugCCGUGu -3'
miRNA:   3'- aUGCCCGcG-GUGUU-----GACGugGGUAUu -5'
24732 5' -56.6 NC_005264.1 + 26158 0.66 0.851326
Target:  5'- aACGGGa-CCACAcccucGgUGCACCCAUu- -3'
miRNA:   3'- aUGCCCgcGGUGU-----UgACGUGGGUAuu -5'
24732 5' -56.6 NC_005264.1 + 26376 0.69 0.68183
Target:  5'- cUGCGcGGCGCCgucucugagcGCGGCcucaGCGCCCAUGc -3'
miRNA:   3'- -AUGC-CCGCGG----------UGUUGa---CGUGGGUAUu -5'
24732 5' -56.6 NC_005264.1 + 27947 0.78 0.239263
Target:  5'- aACGGGCGCCGCGuCUuccaaacaacggugcGCGCCCGUGGu -3'
miRNA:   3'- aUGCCCGCGGUGUuGA---------------CGUGGGUAUU- -5'
24732 5' -56.6 NC_005264.1 + 28816 0.72 0.52717
Target:  5'- --aGGGCGCCugAGCccaugGUACCCAUu- -3'
miRNA:   3'- augCCCGCGGugUUGa----CGUGGGUAuu -5'
24732 5' -56.6 NC_005264.1 + 30252 0.66 0.843204
Target:  5'- aGC-GGUGCCAC-GCUGCACCgAa-- -3'
miRNA:   3'- aUGcCCGCGGUGuUGACGUGGgUauu -5'
24732 5' -56.6 NC_005264.1 + 32566 0.69 0.712535
Target:  5'- cGCGGuagcCGCCGCAACgucgcGCACCCGc-- -3'
miRNA:   3'- aUGCCc---GCGGUGUUGa----CGUGGGUauu -5'
24732 5' -56.6 NC_005264.1 + 33945 0.68 0.732666
Target:  5'- -gUGGcGCGCCGgGACcGCGCCCGa-- -3'
miRNA:   3'- auGCC-CGCGGUgUUGaCGUGGGUauu -5'
24732 5' -56.6 NC_005264.1 + 35808 0.71 0.578057
Target:  5'- gGCGGGCGCCucugccggccccGCAAUgGCGgCCCGUGc -3'
miRNA:   3'- aUGCCCGCGG------------UGUUGaCGU-GGGUAUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.