miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24732 5' -56.6 NC_005264.1 + 36527 0.66 0.866946
Target:  5'- gGCGGGCGCaggagccauCGGCcgcGCGCCCGa-- -3'
miRNA:   3'- aUGCCCGCGgu-------GUUGa--CGUGGGUauu -5'
24732 5' -56.6 NC_005264.1 + 39094 0.67 0.790585
Target:  5'- gGCGGGCaGCgGCGucuggaccaGCUGCugUCGUGGa -3'
miRNA:   3'- aUGCCCG-CGgUGU---------UGACGugGGUAUU- -5'
24732 5' -56.6 NC_005264.1 + 42069 0.66 0.859242
Target:  5'- cGCGGcGCGUgGCGucaGCUGCGCCgGg-- -3'
miRNA:   3'- aUGCC-CGCGgUGU---UGACGUGGgUauu -5'
24732 5' -56.6 NC_005264.1 + 44688 0.67 0.80881
Target:  5'- cAUGGGCgGCCACGGCauagaguucaUGUACCCc--- -3'
miRNA:   3'- aUGCCCG-CGGUGUUG----------ACGUGGGuauu -5'
24732 5' -56.6 NC_005264.1 + 45412 0.66 0.859242
Target:  5'- gGCGGcgcccugcGCGCCGCGACaGC-CCCGa-- -3'
miRNA:   3'- aUGCC--------CGCGGUGUUGaCGuGGGUauu -5'
24732 5' -56.6 NC_005264.1 + 46885 0.77 0.261253
Target:  5'- -uCGGGCGCCGCGuaccuccuaGCUGCGCCgCGUGu -3'
miRNA:   3'- auGCCCGCGGUGU---------UGACGUGG-GUAUu -5'
24732 5' -56.6 NC_005264.1 + 55572 0.67 0.789657
Target:  5'- aGCGcGGC-CCACugcagcgGACaUGCGCCCGUGAa -3'
miRNA:   3'- aUGC-CCGcGGUG-------UUG-ACGUGGGUAUU- -5'
24732 5' -56.6 NC_005264.1 + 55606 0.67 0.781246
Target:  5'- cAUGGGaaaGCCGCGGCUGgCGCCgAa-- -3'
miRNA:   3'- aUGCCCg--CGGUGUUGAC-GUGGgUauu -5'
24732 5' -56.6 NC_005264.1 + 55904 0.7 0.639298
Target:  5'- cUGCGGcCGCCGCAGCUGUcgaggaaaaagugACCCGg-- -3'
miRNA:   3'- -AUGCCcGCGGUGUUGACG-------------UGGGUauu -5'
24732 5' -56.6 NC_005264.1 + 58722 0.67 0.781246
Target:  5'- gGCGGGCgGCCACcaggggGAC-GuCGCCCAUGu -3'
miRNA:   3'- aUGCCCG-CGGUG------UUGaC-GUGGGUAUu -5'
24732 5' -56.6 NC_005264.1 + 61261 0.71 0.547353
Target:  5'- cACGGcGCGCCuCGGC-GUACCCGUAu -3'
miRNA:   3'- aUGCC-CGCGGuGUUGaCGUGGGUAUu -5'
24732 5' -56.6 NC_005264.1 + 61921 0.69 0.68183
Target:  5'- cACGGGCGCCGCcGCUuGCGCg----- -3'
miRNA:   3'- aUGCCCGCGGUGuUGA-CGUGgguauu -5'
24732 5' -56.6 NC_005264.1 + 62452 0.68 0.742601
Target:  5'- aUACgGGGCGCaGCAGCgGCAUCCGc-- -3'
miRNA:   3'- -AUG-CCCGCGgUGUUGaCGUGGGUauu -5'
24732 5' -56.6 NC_005264.1 + 67183 0.68 0.722641
Target:  5'- gGCGGccugcaGCGCUAUGACgcgGCGCCUAUAGu -3'
miRNA:   3'- aUGCC------CGCGGUGUUGa--CGUGGGUAUU- -5'
24732 5' -56.6 NC_005264.1 + 67360 0.67 0.799776
Target:  5'- gGCGGaaaacguaGCGcCCGCGcucGCUGCGCCCGc-- -3'
miRNA:   3'- aUGCC--------CGC-GGUGU---UGACGUGGGUauu -5'
24732 5' -56.6 NC_005264.1 + 68261 0.69 0.68183
Target:  5'- cGCGGGCgGCCu--GCUGCugCCGc-- -3'
miRNA:   3'- aUGCCCG-CGGuguUGACGugGGUauu -5'
24732 5' -56.6 NC_005264.1 + 71660 0.68 0.742601
Target:  5'- gUGCGuGGCGUaCACGuguuuGCUGCACCCcgGc -3'
miRNA:   3'- -AUGC-CCGCG-GUGU-----UGACGUGGGuaUu -5'
24732 5' -56.6 NC_005264.1 + 71883 0.71 0.598736
Target:  5'- cGCGGGCGCC-CGAC-GCAaacaCCGUGu -3'
miRNA:   3'- aUGCCCGCGGuGUUGaCGUg---GGUAUu -5'
24732 5' -56.6 NC_005264.1 + 72460 0.66 0.866946
Target:  5'- gGCGGGCGCCGCcggucgGAUcgUGUACCgGc-- -3'
miRNA:   3'- aUGCCCGCGGUG------UUG--ACGUGGgUauu -5'
24732 5' -56.6 NC_005264.1 + 74396 0.7 0.639298
Target:  5'- aGCGGGCGUCgaACAgguucugGCUGCgggaGCCCAUGu -3'
miRNA:   3'- aUGCCCGCGG--UGU-------UGACG----UGGGUAUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.