miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24732 5' -56.6 NC_005264.1 + 159392 0.68 0.742601
Target:  5'- -cCGGGCGCCACgGGCgGCggACCCcUGAg -3'
miRNA:   3'- auGCCCGCGGUG-UUGaCG--UGGGuAUU- -5'
24732 5' -56.6 NC_005264.1 + 158121 0.67 0.790585
Target:  5'- gGCGGGCaGCgGCGucuggaccaGCUGCugUCGUGGa -3'
miRNA:   3'- aUGCCCG-CGgUGU---------UGACGugGGUAUU- -5'
24732 5' -56.6 NC_005264.1 + 154987 0.67 0.781246
Target:  5'- -gUGGGgGCCucGCAGCUGUACCuCAa-- -3'
miRNA:   3'- auGCCCgCGG--UGUUGACGUGG-GUauu -5'
24732 5' -56.6 NC_005264.1 + 154834 0.71 0.578057
Target:  5'- gGCGGGCGCCucugccggccccGCAAUgGCGgCCCGUGc -3'
miRNA:   3'- aUGCCCGCGG------------UGUUGaCGU-GGGUAUu -5'
24732 5' -56.6 NC_005264.1 + 152972 0.68 0.732666
Target:  5'- -gUGGcGCGCCGgGACcGCGCCCGa-- -3'
miRNA:   3'- auGCC-CGCGGUgUUGaCGUGGGUauu -5'
24732 5' -56.6 NC_005264.1 + 152768 0.72 0.497443
Target:  5'- gGCGGGagauucCGCCGCGGCUGCAgUUAUGAu -3'
miRNA:   3'- aUGCCC------GCGGUGUUGACGUgGGUAUU- -5'
24732 5' -56.6 NC_005264.1 + 147246 0.74 0.395875
Target:  5'- aUGCcGGaGCCGCAGCUGCGCCCGc-- -3'
miRNA:   3'- -AUGcCCgCGGUGUUGACGUGGGUauu -5'
24732 5' -56.6 NC_005264.1 + 142935 0.66 0.859242
Target:  5'- cAC-GGCGCCACcACaaaGCACCCGa-- -3'
miRNA:   3'- aUGcCCGCGGUGuUGa--CGUGGGUauu -5'
24732 5' -56.6 NC_005264.1 + 142703 0.69 0.69212
Target:  5'- gGCGGcGCGCCACGcCUGC-CCgCAUc- -3'
miRNA:   3'- aUGCC-CGCGGUGUuGACGuGG-GUAuu -5'
24732 5' -56.6 NC_005264.1 + 141519 1.04 0.004092
Target:  5'- cUACGGGCGCCACAACUGCACCCAUAAg -3'
miRNA:   3'- -AUGCCCGCGGUGUUGACGUGGGUAUU- -5'
24732 5' -56.6 NC_005264.1 + 138810 0.66 0.866946
Target:  5'- gACGuGCGUCACGACUGUguagACCCu--- -3'
miRNA:   3'- aUGCcCGCGGUGUUGACG----UGGGuauu -5'
24732 5' -56.6 NC_005264.1 + 134877 0.71 0.567773
Target:  5'- cACGGGCGCgCACcguuguuuggaaGACgcgGCGCCCGUu- -3'
miRNA:   3'- aUGCCCGCG-GUG------------UUGa--CGUGGGUAuu -5'
24732 5' -56.6 NC_005264.1 + 130798 0.66 0.843204
Target:  5'- -cCGGGCGCCugG-CUcGCACUCcgGGg -3'
miRNA:   3'- auGCCCGCGGugUuGA-CGUGGGuaUU- -5'
24732 5' -56.6 NC_005264.1 + 127924 0.68 0.775575
Target:  5'- gGCGGGCGCCACugggccaguaaccCUGC-CCUcgAAg -3'
miRNA:   3'- aUGCCCGCGGUGuu-----------GACGuGGGuaUU- -5'
24732 5' -56.6 NC_005264.1 + 127031 0.67 0.812378
Target:  5'- uUGCGGGgccggcagaggcgccCGCCACGACgGCGCCa---- -3'
miRNA:   3'- -AUGCCC---------------GCGGUGUUGaCGUGGguauu -5'
24732 5' -56.6 NC_005264.1 + 126433 0.68 0.732666
Target:  5'- cUugGGGCGCCucacguCAGCUagaugGCGCCUAg-- -3'
miRNA:   3'- -AugCCCGCGGu-----GUUGA-----CGUGGGUauu -5'
24732 5' -56.6 NC_005264.1 + 125539 0.7 0.650744
Target:  5'- gGCGGGUguuGCUGCGGCUGCGgCgCAUAAa -3'
miRNA:   3'- aUGCCCG---CGGUGUUGACGUgG-GUAUU- -5'
24732 5' -56.6 NC_005264.1 + 124314 0.7 0.609118
Target:  5'- gGCGGG-GCgGCGGCUG-ACCCGUGGg -3'
miRNA:   3'- aUGCCCgCGgUGUUGACgUGGGUAUU- -5'
24732 5' -56.6 NC_005264.1 + 116292 0.69 0.671498
Target:  5'- cGCGGGCgGCUACGGCUGUGgCCu--- -3'
miRNA:   3'- aUGCCCG-CGGUGUUGACGUgGGuauu -5'
24732 5' -56.6 NC_005264.1 + 110148 0.69 0.685952
Target:  5'- gGCGGGCggcgaaacccGCCGCGGCUuuggggccuauccugGCAUCCGUAc -3'
miRNA:   3'- aUGCCCG----------CGGUGUUGA---------------CGUGGGUAUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.