miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24732 5' -56.6 NC_005264.1 + 107661 0.67 0.817678
Target:  5'- cGCGGuCGCCGCcuucAGCcGCGCCCAg-- -3'
miRNA:   3'- aUGCCcGCGGUG----UUGaCGUGGGUauu -5'
24732 5' -56.6 NC_005264.1 + 104816 0.67 0.817678
Target:  5'- aGCGGGCGCCGCAcgacggcCUGUccGCCgGg-- -3'
miRNA:   3'- aUGCCCGCGGUGUu------GACG--UGGgUauu -5'
24732 5' -56.6 NC_005264.1 + 100385 0.72 0.537229
Target:  5'- cUGCGGaUGCCGCuGCUGCGcCCCGUAu -3'
miRNA:   3'- -AUGCCcGCGGUGuUGACGU-GGGUAUu -5'
24732 5' -56.6 NC_005264.1 + 97436 0.67 0.780304
Target:  5'- cUGCGGGCGCCGCcgcggaucugauaGACguaGCGCCg---- -3'
miRNA:   3'- -AUGCCCGCGGUG-------------UUGa--CGUGGguauu -5'
24732 5' -56.6 NC_005264.1 + 95483 0.66 0.866946
Target:  5'- cGCGGGCGCUACGuuuucCGCCCu--- -3'
miRNA:   3'- aUGCCCGCGGUGUugac-GUGGGuauu -5'
24732 5' -56.6 NC_005264.1 + 95202 0.66 0.866946
Target:  5'- gACGGGcCGCgCAgGACaccccUGCGCCCGc-- -3'
miRNA:   3'- aUGCCC-GCG-GUgUUG-----ACGUGGGUauu -5'
24732 5' -56.6 NC_005264.1 + 94681 0.76 0.311575
Target:  5'- gGCGGGCGCCGCAacguucacauaACggccguggucaacgGCGCCCAUGc -3'
miRNA:   3'- aUGCCCGCGGUGU-----------UGa-------------CGUGGGUAUu -5'
24732 5' -56.6 NC_005264.1 + 88060 0.69 0.661133
Target:  5'- aUACGGGCGCCAUcuuacauguAUUGCGCCa---- -3'
miRNA:   3'- -AUGCCCGCGGUGu--------UGACGUGGguauu -5'
24732 5' -56.6 NC_005264.1 + 86651 0.67 0.790585
Target:  5'- -uUGGGCGCCGCGGggGaCACCCu--- -3'
miRNA:   3'- auGCCCGCGGUGUUgaC-GUGGGuauu -5'
24732 5' -56.6 NC_005264.1 + 86436 0.66 0.866946
Target:  5'- -cCGGGCGCCcUAugUGCcacGCCCu--- -3'
miRNA:   3'- auGCCCGCGGuGUugACG---UGGGuauu -5'
24732 5' -56.6 NC_005264.1 + 85781 0.7 0.650744
Target:  5'- cGCGGGgGCUGuuaagcuugauCAACUGCACCCu--- -3'
miRNA:   3'- aUGCCCgCGGU-----------GUUGACGUGGGuauu -5'
24732 5' -56.6 NC_005264.1 + 83120 0.67 0.778416
Target:  5'- gACGGGCGCCaaggccgcggaggcGCGuCUGCcCUCAUGGu -3'
miRNA:   3'- aUGCCCGCGG--------------UGUuGACGuGGGUAUU- -5'
24732 5' -56.6 NC_005264.1 + 79402 0.66 0.843204
Target:  5'- cGCGGGCguggcgagGCCGCGGCggaACCCAg-- -3'
miRNA:   3'- aUGCCCG--------CGGUGUUGacgUGGGUauu -5'
24732 5' -56.6 NC_005264.1 + 76098 0.66 0.851326
Target:  5'- cUACGGGCGCgaACAGCgcgGCAUCa---- -3'
miRNA:   3'- -AUGCCCGCGg-UGUUGa--CGUGGguauu -5'
24732 5' -56.6 NC_005264.1 + 74396 0.7 0.639298
Target:  5'- aGCGGGCGUCgaACAgguucugGCUGCgggaGCCCAUGu -3'
miRNA:   3'- aUGCCCGCGG--UGU-------UGACG----UGGGUAUu -5'
24732 5' -56.6 NC_005264.1 + 72460 0.66 0.866946
Target:  5'- gGCGGGCGCCGCcggucgGAUcgUGUACCgGc-- -3'
miRNA:   3'- aUGCCCGCGGUG------UUG--ACGUGGgUauu -5'
24732 5' -56.6 NC_005264.1 + 71883 0.71 0.598736
Target:  5'- cGCGGGCGCC-CGAC-GCAaacaCCGUGu -3'
miRNA:   3'- aUGCCCGCGGuGUUGaCGUg---GGUAUu -5'
24732 5' -56.6 NC_005264.1 + 71660 0.68 0.742601
Target:  5'- gUGCGuGGCGUaCACGuguuuGCUGCACCCcgGc -3'
miRNA:   3'- -AUGC-CCGCG-GUGU-----UGACGUGGGuaUu -5'
24732 5' -56.6 NC_005264.1 + 68261 0.69 0.68183
Target:  5'- cGCGGGCgGCCu--GCUGCugCCGc-- -3'
miRNA:   3'- aUGCCCG-CGGuguUGACGugGGUauu -5'
24732 5' -56.6 NC_005264.1 + 67360 0.67 0.799776
Target:  5'- gGCGGaaaacguaGCGcCCGCGcucGCUGCGCCCGc-- -3'
miRNA:   3'- aUGCC--------CGC-GGUGU---UGACGUGGGUauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.