miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24732 5' -56.6 NC_005264.1 + 141519 1.04 0.004092
Target:  5'- cUACGGGCGCCACAACUGCACCCAUAAg -3'
miRNA:   3'- -AUGCCCGCGGUGUUGACGUGGGUAUU- -5'
24732 5' -56.6 NC_005264.1 + 152972 0.68 0.732666
Target:  5'- -gUGGcGCGCCGgGACcGCGCCCGa-- -3'
miRNA:   3'- auGCC-CGCGGUgUUGaCGUGGGUauu -5'
24732 5' -56.6 NC_005264.1 + 55572 0.67 0.789657
Target:  5'- aGCGcGGC-CCACugcagcgGACaUGCGCCCGUGAa -3'
miRNA:   3'- aUGC-CCGcGGUG-------UUG-ACGUGGGUAUU- -5'
24732 5' -56.6 NC_005264.1 + 36527 0.66 0.866946
Target:  5'- gGCGGGCGCaggagccauCGGCcgcGCGCCCGa-- -3'
miRNA:   3'- aUGCCCGCGgu-------GUUGa--CGUGGGUauu -5'
24732 5' -56.6 NC_005264.1 + 61261 0.71 0.547353
Target:  5'- cACGGcGCGCCuCGGC-GUACCCGUAu -3'
miRNA:   3'- aUGCC-CGCGGuGUUGaCGUGGGUAUu -5'
24732 5' -56.6 NC_005264.1 + 134877 0.71 0.567773
Target:  5'- cACGGGCGCgCACcguuguuuggaaGACgcgGCGCCCGUu- -3'
miRNA:   3'- aUGCCCGCG-GUG------------UUGa--CGUGGGUAuu -5'
24732 5' -56.6 NC_005264.1 + 71883 0.71 0.598736
Target:  5'- cGCGGGCGCC-CGAC-GCAaacaCCGUGu -3'
miRNA:   3'- aUGCCCGCGGuGUUGaCGUg---GGUAUu -5'
24732 5' -56.6 NC_005264.1 + 124314 0.7 0.609118
Target:  5'- gGCGGG-GCgGCGGCUG-ACCCGUGGg -3'
miRNA:   3'- aUGCCCgCGgUGUUGACgUGGGUAUU- -5'
24732 5' -56.6 NC_005264.1 + 23289 0.69 0.661133
Target:  5'- aACGGGUuuccaggaaaGCCGCGAUcGUGCCCAUGc -3'
miRNA:   3'- aUGCCCG----------CGGUGUUGaCGUGGGUAUu -5'
24732 5' -56.6 NC_005264.1 + 67183 0.68 0.722641
Target:  5'- gGCGGccugcaGCGCUAUGACgcgGCGCCUAUAGu -3'
miRNA:   3'- aUGCC------CGCGGUGUUGa--CGUGGGUAUU- -5'
24732 5' -56.6 NC_005264.1 + 68261 0.69 0.68183
Target:  5'- cGCGGGCgGCCu--GCUGCugCCGc-- -3'
miRNA:   3'- aUGCCCG-CGGuguUGACGugGGUauu -5'
24732 5' -56.6 NC_005264.1 + 85781 0.7 0.650744
Target:  5'- cGCGGGgGCUGuuaagcuugauCAACUGCACCCu--- -3'
miRNA:   3'- aUGCCCgCGGU-----------GUUGACGUGGGuauu -5'
24732 5' -56.6 NC_005264.1 + 94681 0.76 0.311575
Target:  5'- gGCGGGCGCCGCAacguucacauaACggccguggucaacgGCGCCCAUGc -3'
miRNA:   3'- aUGCCCGCGGUGU-----------UGa-------------CGUGGGUAUu -5'
24732 5' -56.6 NC_005264.1 + 142703 0.69 0.69212
Target:  5'- gGCGGcGCGCCACGcCUGC-CCgCAUc- -3'
miRNA:   3'- aUGCC-CGCGGUGUuGACGuGG-GUAuu -5'
24732 5' -56.6 NC_005264.1 + 147246 0.74 0.395875
Target:  5'- aUGCcGGaGCCGCAGCUGCGCCCGc-- -3'
miRNA:   3'- -AUGcCCgCGGUGUUGACGUGGGUauu -5'
24732 5' -56.6 NC_005264.1 + 55904 0.7 0.639298
Target:  5'- cUGCGGcCGCCGCAGCUGUcgaggaaaaagugACCCGg-- -3'
miRNA:   3'- -AUGCCcGCGGUGUUGACG-------------UGGGUauu -5'
24732 5' -56.6 NC_005264.1 + 32566 0.69 0.712535
Target:  5'- cGCGGuagcCGCCGCAACgucgcGCACCCGc-- -3'
miRNA:   3'- aUGCCc---GCGGUGUUGa----CGUGGGUauu -5'
24732 5' -56.6 NC_005264.1 + 97436 0.67 0.780304
Target:  5'- cUGCGGGCGCCGCcgcggaucugauaGACguaGCGCCg---- -3'
miRNA:   3'- -AUGCCCGCGGUG-------------UUGa--CGUGGguauu -5'
24732 5' -56.6 NC_005264.1 + 100385 0.72 0.537229
Target:  5'- cUGCGGaUGCCGCuGCUGCGcCCCGUAu -3'
miRNA:   3'- -AUGCCcGCGGUGuUGACGU-GGGUAUu -5'
24732 5' -56.6 NC_005264.1 + 154834 0.71 0.578057
Target:  5'- gGCGGGCGCCucugccggccccGCAAUgGCGgCCCGUGc -3'
miRNA:   3'- aUGCCCGCGG------------UGUUGaCGU-GGGUAUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.