miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24732 5' -56.6 NC_005264.1 + 97436 0.67 0.780304
Target:  5'- cUGCGGGCGCCGCcgcggaucugauaGACguaGCGCCg---- -3'
miRNA:   3'- -AUGCCCGCGGUG-------------UUGa--CGUGGguauu -5'
24732 5' -56.6 NC_005264.1 + 130798 0.66 0.843204
Target:  5'- -cCGGGCGCCugG-CUcGCACUCcgGGg -3'
miRNA:   3'- auGCCCGCGGugUuGA-CGUGGGuaUU- -5'
24732 5' -56.6 NC_005264.1 + 152972 0.68 0.732666
Target:  5'- -gUGGcGCGCCGgGACcGCGCCCGa-- -3'
miRNA:   3'- auGCC-CGCGGUgUUGaCGUGGGUauu -5'
24732 5' -56.6 NC_005264.1 + 147246 0.74 0.395875
Target:  5'- aUGCcGGaGCCGCAGCUGCGCCCGc-- -3'
miRNA:   3'- -AUGcCCgCGGUGUUGACGUGGGUauu -5'
24732 5' -56.6 NC_005264.1 + 30252 0.66 0.843204
Target:  5'- aGC-GGUGCCAC-GCUGCACCgAa-- -3'
miRNA:   3'- aUGcCCGCGGUGuUGACGUGGgUauu -5'
24732 5' -56.6 NC_005264.1 + 19090 0.67 0.817678
Target:  5'- --aGGGaGCCAgGACUGCACCgCGg-- -3'
miRNA:   3'- augCCCgCGGUgUUGACGUGG-GUauu -5'
24732 5' -56.6 NC_005264.1 + 26158 0.66 0.851326
Target:  5'- aACGGGa-CCACAcccucGgUGCACCCAUu- -3'
miRNA:   3'- aUGCCCgcGGUGU-----UgACGUGGGUAuu -5'
24732 5' -56.6 NC_005264.1 + 36527 0.66 0.866946
Target:  5'- gGCGGGCGCaggagccauCGGCcgcGCGCCCGa-- -3'
miRNA:   3'- aUGCCCGCGgu-------GUUGa--CGUGGGUauu -5'
24732 5' -56.6 NC_005264.1 + 94681 0.76 0.311575
Target:  5'- gGCGGGCGCCGCAacguucacauaACggccguggucaacgGCGCCCAUGc -3'
miRNA:   3'- aUGCCCGCGGUGU-----------UGa-------------CGUGGGUAUu -5'
24732 5' -56.6 NC_005264.1 + 141519 1.04 0.004092
Target:  5'- cUACGGGCGCCACAACUGCACCCAUAAg -3'
miRNA:   3'- -AUGCCCGCGGUGUUGACGUGGGUAUU- -5'
24732 5' -56.6 NC_005264.1 + 61261 0.71 0.547353
Target:  5'- cACGGcGCGCCuCGGC-GUACCCGUAu -3'
miRNA:   3'- aUGCC-CGCGGuGUUGaCGUGGGUAUu -5'
24732 5' -56.6 NC_005264.1 + 100385 0.72 0.537229
Target:  5'- cUGCGGaUGCCGCuGCUGCGcCCCGUAu -3'
miRNA:   3'- -AUGCCcGCGGUGuUGACGU-GGGUAUu -5'
24732 5' -56.6 NC_005264.1 + 15592 0.66 0.856889
Target:  5'- uUGCGGGCGCagcuGCGGCUccggcauaucucucGUGCCCAc-- -3'
miRNA:   3'- -AUGCCCGCGg---UGUUGA--------------CGUGGGUauu -5'
24732 5' -56.6 NC_005264.1 + 126433 0.68 0.732666
Target:  5'- cUugGGGCGCCucacguCAGCUagaugGCGCCUAg-- -3'
miRNA:   3'- -AugCCCGCGGu-----GUUGA-----CGUGGGUauu -5'
24732 5' -56.6 NC_005264.1 + 33945 0.68 0.732666
Target:  5'- -gUGGcGCGCCGgGACcGCGCCCGa-- -3'
miRNA:   3'- auGCC-CGCGGUgUUGaCGUGGGUauu -5'
24732 5' -56.6 NC_005264.1 + 71660 0.68 0.742601
Target:  5'- gUGCGuGGCGUaCACGuguuuGCUGCACCCcgGc -3'
miRNA:   3'- -AUGC-CCGCG-GUGU-----UGACGUGGGuaUu -5'
24732 5' -56.6 NC_005264.1 + 62452 0.68 0.742601
Target:  5'- aUACgGGGCGCaGCAGCgGCAUCCGc-- -3'
miRNA:   3'- -AUG-CCCGCGgUGUUGaCGUGGGUauu -5'
24732 5' -56.6 NC_005264.1 + 159392 0.68 0.742601
Target:  5'- -cCGGGCGCCACgGGCgGCggACCCcUGAg -3'
miRNA:   3'- auGCCCGCGGUG-UUGaCG--UGGGuAUU- -5'
24732 5' -56.6 NC_005264.1 + 104816 0.67 0.817678
Target:  5'- aGCGGGCGCCGCAcgacggcCUGUccGCCgGg-- -3'
miRNA:   3'- aUGCCCGCGGUGUu------GACG--UGGgUauu -5'
24732 5' -56.6 NC_005264.1 + 8004 0.67 0.812378
Target:  5'- uUGCGGGgccggcagaggcgccCGCCACGACgGCGCCa---- -3'
miRNA:   3'- -AUGCCC---------------GCGGUGUUGaCGUGGguauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.