miRNA display CGI


Results 41 - 60 of 74 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24732 5' -56.6 NC_005264.1 + 142935 0.66 0.859242
Target:  5'- cAC-GGCGCCACcACaaaGCACCCGa-- -3'
miRNA:   3'- aUGcCCGCGGUGuUGa--CGUGGGUauu -5'
24732 5' -56.6 NC_005264.1 + 45412 0.66 0.859242
Target:  5'- gGCGGcgcccugcGCGCCGCGACaGC-CCCGa-- -3'
miRNA:   3'- aUGCC--------CGCGGUGUUGaCGuGGGUauu -5'
24732 5' -56.6 NC_005264.1 + 62452 0.68 0.742601
Target:  5'- aUACgGGGCGCaGCAGCgGCAUCCGc-- -3'
miRNA:   3'- -AUG-CCCGCGgUGUUGaCGUGGGUauu -5'
24732 5' -56.6 NC_005264.1 + 72460 0.66 0.866946
Target:  5'- gGCGGGCGCCGCcggucgGAUcgUGUACCgGc-- -3'
miRNA:   3'- aUGCCCGCGGUG------UUG--ACGUGGgUauu -5'
24732 5' -56.6 NC_005264.1 + 159392 0.68 0.742601
Target:  5'- -cCGGGCGCCACgGGCgGCggACCCcUGAg -3'
miRNA:   3'- auGCCCGCGGUG-UUGaCG--UGGGuAUU- -5'
24732 5' -56.6 NC_005264.1 + 107661 0.67 0.817678
Target:  5'- cGCGGuCGCCGCcuucAGCcGCGCCCAg-- -3'
miRNA:   3'- aUGCCcGCGGUG----UUGaCGUGGGUauu -5'
24732 5' -56.6 NC_005264.1 + 104816 0.67 0.817678
Target:  5'- aGCGGGCGCCGCAcgacggcCUGUccGCCgGg-- -3'
miRNA:   3'- aUGCCCGCGGUGUu------GACG--UGGgUauu -5'
24732 5' -56.6 NC_005264.1 + 8004 0.67 0.812378
Target:  5'- uUGCGGGgccggcagaggcgccCGCCACGACgGCGCCa---- -3'
miRNA:   3'- -AUGCCC---------------GCGGUGUUGaCGUGGguauu -5'
24732 5' -56.6 NC_005264.1 + 58722 0.67 0.781246
Target:  5'- gGCGGGCgGCCACcaggggGAC-GuCGCCCAUGu -3'
miRNA:   3'- aUGCCCG-CGGUG------UUGaC-GUGGGUAUu -5'
24732 5' -56.6 NC_005264.1 + 154987 0.67 0.781246
Target:  5'- -gUGGGgGCCucGCAGCUGUACCuCAa-- -3'
miRNA:   3'- auGCCCgCGG--UGUUGACGUGG-GUauu -5'
24732 5' -56.6 NC_005264.1 + 55606 0.67 0.781246
Target:  5'- cAUGGGaaaGCCGCGGCUGgCGCCgAa-- -3'
miRNA:   3'- aUGCCCg--CGGUGUUGAC-GUGGgUauu -5'
24732 5' -56.6 NC_005264.1 + 5287 0.7 0.609118
Target:  5'- gGCGGG-GCgGCGGCUG-ACCCGUGGg -3'
miRNA:   3'- aUGCCCgCGgUGUUGACgUGGGUAUU- -5'
24732 5' -56.6 NC_005264.1 + 35808 0.71 0.578057
Target:  5'- gGCGGGCGCCucugccggccccGCAAUgGCGgCCCGUGc -3'
miRNA:   3'- aUGCCCGCGG------------UGUUGaCGU-GGGUAUu -5'
24732 5' -56.6 NC_005264.1 + 28816 0.72 0.52717
Target:  5'- --aGGGCGCCugAGCccaugGUACCCAUu- -3'
miRNA:   3'- augCCCGCGGugUUGa----CGUGGGUAuu -5'
24732 5' -56.6 NC_005264.1 + 152768 0.72 0.497443
Target:  5'- gGCGGGagauucCGCCGCGGCUGCAgUUAUGAu -3'
miRNA:   3'- aUGCCC------GCGGUGUUGACGUgGGUAUU- -5'
24732 5' -56.6 NC_005264.1 + 46885 0.77 0.261253
Target:  5'- -uCGGGCGCCGCGuaccuccuaGCUGCGCCgCGUGu -3'
miRNA:   3'- auGCCCGCGGUGU---------UGACGUGG-GUAUu -5'
24732 5' -56.6 NC_005264.1 + 27947 0.78 0.239263
Target:  5'- aACGGGCGCCGCGuCUuccaaacaacggugcGCGCCCGUGGu -3'
miRNA:   3'- aUGCCCGCGGUGUuGA---------------CGUGGGUAUU- -5'
24732 5' -56.6 NC_005264.1 + 127924 0.68 0.775575
Target:  5'- gGCGGGCGCCACugggccaguaaccCUGC-CCUcgAAg -3'
miRNA:   3'- aUGCCCGCGGUGuu-----------GACGuGGGuaUU- -5'
24732 5' -56.6 NC_005264.1 + 16612 0.68 0.762162
Target:  5'- -cCGGGCGCCACGACgccGCGgCgAUu- -3'
miRNA:   3'- auGCCCGCGGUGUUGa--CGUgGgUAuu -5'
24732 5' -56.6 NC_005264.1 + 126433 0.68 0.732666
Target:  5'- cUugGGGCGCCucacguCAGCUagaugGCGCCUAg-- -3'
miRNA:   3'- -AugCCCGCGGu-----GUUGA-----CGUGGGUauu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.