miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24732 5' -56.6 NC_005264.1 + 58722 0.67 0.781246
Target:  5'- gGCGGGCgGCCACcaggggGAC-GuCGCCCAUGu -3'
miRNA:   3'- aUGCCCG-CGGUG------UUGaC-GUGGGUAUu -5'
24732 5' -56.6 NC_005264.1 + 107661 0.67 0.817678
Target:  5'- cGCGGuCGCCGCcuucAGCcGCGCCCAg-- -3'
miRNA:   3'- aUGCCcGCGGUG----UUGaCGUGGGUauu -5'
24732 5' -56.6 NC_005264.1 + 104816 0.67 0.817678
Target:  5'- aGCGGGCGCCGCAcgacggcCUGUccGCCgGg-- -3'
miRNA:   3'- aUGCCCGCGGUGUu------GACG--UGGgUauu -5'
24732 5' -56.6 NC_005264.1 + 8004 0.67 0.812378
Target:  5'- uUGCGGGgccggcagaggcgccCGCCACGACgGCGCCa---- -3'
miRNA:   3'- -AUGCCC---------------GCGGUGUUGaCGUGGguauu -5'
24732 5' -56.6 NC_005264.1 + 44688 0.67 0.80881
Target:  5'- cAUGGGCgGCCACGGCauagaguucaUGUACCCc--- -3'
miRNA:   3'- aUGCCCG-CGGUGUUG----------ACGUGGGuauu -5'
24732 5' -56.6 NC_005264.1 + 39094 0.67 0.790585
Target:  5'- gGCGGGCaGCgGCGucuggaccaGCUGCugUCGUGGa -3'
miRNA:   3'- aUGCCCG-CGgUGU---------UGACGugGGUAUU- -5'
24732 5' -56.6 NC_005264.1 + 86651 0.67 0.790585
Target:  5'- -uUGGGCGCCGCGGggGaCACCCu--- -3'
miRNA:   3'- auGCCCGCGGUGUUgaC-GUGGGuauu -5'
24732 5' -56.6 NC_005264.1 + 55606 0.67 0.781246
Target:  5'- cAUGGGaaaGCCGCGGCUGgCGCCgAa-- -3'
miRNA:   3'- aUGCCCg--CGGUGUUGAC-GUGGgUauu -5'
24732 5' -56.6 NC_005264.1 + 154987 0.67 0.781246
Target:  5'- -gUGGGgGCCucGCAGCUGUACCuCAa-- -3'
miRNA:   3'- auGCCCgCGG--UGUUGACGUGG-GUauu -5'
24732 5' -56.6 NC_005264.1 + 17893 0.66 0.834884
Target:  5'- cUACGGcGCGCacaGCAGCUGaucaGCCCc--- -3'
miRNA:   3'- -AUGCC-CGCGg--UGUUGACg---UGGGuauu -5'
24732 5' -56.6 NC_005264.1 + 79402 0.66 0.843204
Target:  5'- cGCGGGCguggcgagGCCGCGGCggaACCCAg-- -3'
miRNA:   3'- aUGCCCG--------CGGUGUUGacgUGGGUauu -5'
24732 5' -56.6 NC_005264.1 + 11772 0.66 0.843204
Target:  5'- -cCGGGCGCCugG-CUcGCACUCcgGGg -3'
miRNA:   3'- auGCCCGCGGugUuGA-CGUGGGuaUU- -5'
24732 5' -56.6 NC_005264.1 + 95483 0.66 0.866946
Target:  5'- cGCGGGCGCUACGuuuucCGCCCu--- -3'
miRNA:   3'- aUGCCCGCGGUGUugac-GUGGGuauu -5'
24732 5' -56.6 NC_005264.1 + 72460 0.66 0.866946
Target:  5'- gGCGGGCGCCGCcggucgGAUcgUGUACCgGc-- -3'
miRNA:   3'- aUGCCCGCGGUG------UUG--ACGUGGgUauu -5'
24732 5' -56.6 NC_005264.1 + 138810 0.66 0.866946
Target:  5'- gACGuGCGUCACGACUGUguagACCCu--- -3'
miRNA:   3'- aUGCcCGCGGUGUUGACG----UGGGuauu -5'
24732 5' -56.6 NC_005264.1 + 45412 0.66 0.859242
Target:  5'- gGCGGcgcccugcGCGCCGCGACaGC-CCCGa-- -3'
miRNA:   3'- aUGCC--------CGCGGUGUUGaCGuGGGUauu -5'
24732 5' -56.6 NC_005264.1 + 142935 0.66 0.859242
Target:  5'- cAC-GGCGCCACcACaaaGCACCCGa-- -3'
miRNA:   3'- aUGcCCGCGGUGuUGa--CGUGGGUauu -5'
24732 5' -56.6 NC_005264.1 + 15592 0.66 0.856889
Target:  5'- uUGCGGGCGCagcuGCGGCUccggcauaucucucGUGCCCAc-- -3'
miRNA:   3'- -AUGCCCGCGg---UGUUGA--------------CGUGGGUauu -5'
24732 5' -56.6 NC_005264.1 + 76098 0.66 0.851326
Target:  5'- cUACGGGCGCgaACAGCgcgGCAUCa---- -3'
miRNA:   3'- -AUGCCCGCGg-UGUUGa--CGUGGguauu -5'
24732 5' -56.6 NC_005264.1 + 23711 0.66 0.851326
Target:  5'- cGCGGGC-CaCACGAacaauCUGCugCCGUGu -3'
miRNA:   3'- aUGCCCGcG-GUGUU-----GACGugGGUAUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.