Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24733 | 3' | -52.4 | NC_005264.1 | + | 79104 | 0.67 | 0.964919 |
Target: 5'- gGGGAgacGCUUaagcucggcACGGCgGCGUGCgcuugccccuucuccGUGGUu -3' miRNA: 3'- -CCCUa--CGAA---------UGCCGaUGCACG---------------UACCG- -5' |
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24733 | 3' | -52.4 | NC_005264.1 | + | 145783 | 0.68 | 0.960031 |
Target: 5'- aGGGAuggcggucggcaUGCUcuuaGCGGCcGCGcUGC-UGGCg -3' miRNA: 3'- -CCCU------------ACGAa---UGCCGaUGC-ACGuACCG- -5' |
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24733 | 3' | -52.4 | NC_005264.1 | + | 94592 | 0.69 | 0.938821 |
Target: 5'- aGGccGCccGCGGC-GCGgGCAUGGCu -3' miRNA: 3'- cCCuaCGaaUGCCGaUGCaCGUACCG- -5' |
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24733 | 3' | -52.4 | NC_005264.1 | + | 44436 | 0.69 | 0.938821 |
Target: 5'- gGGGAagaugGCcgaGCGGUacuacuacUACGUGCAgcUGGCg -3' miRNA: 3'- -CCCUa----CGaa-UGCCG--------AUGCACGU--ACCG- -5' |
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24733 | 3' | -52.4 | NC_005264.1 | + | 68183 | 0.69 | 0.938821 |
Target: 5'- cGGGcacGUUcAUGGCUACGUGCuccAUGGg -3' miRNA: 3'- -CCCua-CGAaUGCCGAUGCACG---UACCg -5' |
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24733 | 3' | -52.4 | NC_005264.1 | + | 105818 | 0.69 | 0.932308 |
Target: 5'- gGGGAaaUGgUUaugguaucggcggaACGGUUcuCGUGCAUGGCc -3' miRNA: 3'- -CCCU--ACgAA--------------UGCCGAu-GCACGUACCG- -5' |
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24733 | 3' | -52.4 | NC_005264.1 | + | 150052 | 0.69 | 0.926471 |
Target: 5'- uGGGcgacgGUGCcgccuagcggucgUGCGGCUGCGuUGCGgacGGCa -3' miRNA: 3'- -CCC-----UACGa------------AUGCCGAUGC-ACGUa--CCG- -5' |
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24733 | 3' | -52.4 | NC_005264.1 | + | 31025 | 0.69 | 0.926471 |
Target: 5'- uGGGcgacgGUGCcgccuagcggucgUGCGGCUGCGuUGCGgacGGCa -3' miRNA: 3'- -CCC-----UACGa------------AUGCCGAUGC-ACGUa--CCG- -5' |
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24733 | 3' | -52.4 | NC_005264.1 | + | 93332 | 0.69 | 0.917443 |
Target: 5'- aGGGccaGCUaACGGCguggcacGCGUGUAUGGa -3' miRNA: 3'- -CCCua-CGAaUGCCGa------UGCACGUACCg -5' |
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24733 | 3' | -52.4 | NC_005264.1 | + | 84956 | 0.69 | 0.917443 |
Target: 5'- cGGGUGCUcgcuUGCGGCcaggcugcUGCGUuaGCgucGUGGCg -3' miRNA: 3'- cCCUACGA----AUGCCG--------AUGCA--CG---UACCG- -5' |
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24733 | 3' | -52.4 | NC_005264.1 | + | 794 | 0.69 | 0.917443 |
Target: 5'- cGGuagcGCUccagUACGGCUGgGUGCGcGGCc -3' miRNA: 3'- cCCua--CGA----AUGCCGAUgCACGUaCCG- -5' |
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24733 | 3' | -52.4 | NC_005264.1 | + | 116292 | 0.7 | 0.911479 |
Target: 5'- ----cGCggGCGGCUACG-GCuGUGGCc -3' miRNA: 3'- cccuaCGaaUGCCGAUGCaCG-UACCG- -5' |
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24733 | 3' | -52.4 | NC_005264.1 | + | 154610 | 0.7 | 0.905268 |
Target: 5'- gGGGA-GCUgcUGCGGCUuCG-GCcgAUGGCc -3' miRNA: 3'- -CCCUaCGA--AUGCCGAuGCaCG--UACCG- -5' |
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24733 | 3' | -52.4 | NC_005264.1 | + | 35583 | 0.7 | 0.905268 |
Target: 5'- gGGGA-GCUgcUGCGGCUuCG-GCcgAUGGCc -3' miRNA: 3'- -CCCUaCGA--AUGCCGAuGCaCG--UACCG- -5' |
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24733 | 3' | -52.4 | NC_005264.1 | + | 117839 | 0.7 | 0.898815 |
Target: 5'- gGGGAgGCgcgGCGGagUGCGcaugcaagGCAUGGCg -3' miRNA: 3'- -CCCUaCGaa-UGCCg-AUGCa-------CGUACCG- -5' |
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24733 | 3' | -52.4 | NC_005264.1 | + | 125856 | 0.71 | 0.870632 |
Target: 5'- aGGGcUGCUgagucugaaagGCGGgUugGUGCAuuaugUGGCu -3' miRNA: 3'- -CCCuACGAa----------UGCCgAugCACGU-----ACCG- -5' |
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24733 | 3' | -52.4 | NC_005264.1 | + | 113694 | 0.71 | 0.855186 |
Target: 5'- cGGGGUGCaa--GGCUugG-GCAgaGGCg -3' miRNA: 3'- -CCCUACGaaugCCGAugCaCGUa-CCG- -5' |
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24733 | 3' | -52.4 | NC_005264.1 | + | 142774 | 0.72 | 0.830463 |
Target: 5'- -cGGUGCUUGCucGCUACGcggggccGCGUGGCg -3' miRNA: 3'- ccCUACGAAUGc-CGAUGCa------CGUACCG- -5' |
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24733 | 3' | -52.4 | NC_005264.1 | + | 107990 | 0.73 | 0.77619 |
Target: 5'- uGGAUGCggGCGGCUcccaggucACGUcGcCGUGGUg -3' miRNA: 3'- cCCUACGaaUGCCGA--------UGCA-C-GUACCG- -5' |
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24733 | 3' | -52.4 | NC_005264.1 | + | 156164 | 0.73 | 0.756928 |
Target: 5'- aGGGcgcauAUGC--GCGGCUuuGCG-GCGUGGCg -3' miRNA: 3'- -CCC-----UACGaaUGCCGA--UGCaCGUACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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