miRNA display CGI


Results 61 - 71 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24733 5' -50.4 NC_005264.1 + 133958 0.7 0.95895
Target:  5'- uGGCCGGGgucuuCGCGGUgGCGUUCGCc -3'
miRNA:   3'- uUCGGUUUgu---GCGCUAgUGCAAGUGc -5'
24733 5' -50.4 NC_005264.1 + 97553 0.7 0.946015
Target:  5'- aGAGCCAGACAUGCugcugcugcauacGAcCACGUUCGg- -3'
miRNA:   3'- -UUCGGUUUGUGCG-------------CUaGUGCAAGUgc -5'
24733 5' -50.4 NC_005264.1 + 20953 0.7 0.95895
Target:  5'- -uGCCAcugaACGUGAUCGCGUguuuggcuuUCGCGg -3'
miRNA:   3'- uuCGGUuug-UGCGCUAGUGCA---------AGUGC- -5'
24733 5' -50.4 NC_005264.1 + 86594 0.7 0.95895
Target:  5'- -cGUgAGACACGCGGucgUCGCGccUCGCGa -3'
miRNA:   3'- uuCGgUUUGUGCGCU---AGUGCa-AGUGC- -5'
24733 5' -50.4 NC_005264.1 + 87578 0.7 0.940361
Target:  5'- -cGCCGAcgaggacgaacacgGCGCGUGGUCGCGUUaUACa -3'
miRNA:   3'- uuCGGUU--------------UGUGCGCUAGUGCAA-GUGc -5'
24733 5' -50.4 NC_005264.1 + 45667 0.72 0.901984
Target:  5'- -cGCCAAGCGCaGUGAagCACGUggCGCGa -3'
miRNA:   3'- uuCGGUUUGUG-CGCUa-GUGCAa-GUGC- -5'
24733 5' -50.4 NC_005264.1 + 50558 0.72 0.895272
Target:  5'- gAAGCUAGGCGCGCGcgUGCGggaagcgCACGc -3'
miRNA:   3'- -UUCGGUUUGUGCGCuaGUGCaa-----GUGC- -5'
24733 5' -50.4 NC_005264.1 + 148482 0.74 0.824324
Target:  5'- cGGCUAgacuauggGACGCGCuGGUCGCGUUgGCGg -3'
miRNA:   3'- uUCGGU--------UUGUGCG-CUAGUGCAAgUGC- -5'
24733 5' -50.4 NC_005264.1 + 43621 0.74 0.824324
Target:  5'- -cGCCAAACcucGCGUGGUCGCGcgUUACGc -3'
miRNA:   3'- uuCGGUUUG---UGCGCUAGUGCa-AGUGC- -5'
24733 5' -50.4 NC_005264.1 + 109587 0.83 0.3769
Target:  5'- cAAGCCAGACACGCGccCGCGgggCACGg -3'
miRNA:   3'- -UUCGGUUUGUGCGCuaGUGCaa-GUGC- -5'
24733 5' -50.4 NC_005264.1 + 141880 1.07 0.014173
Target:  5'- aAAGCCAAACACGCGAUCACGUUCACGu -3'
miRNA:   3'- -UUCGGUUUGUGCGCUAGUGCAAGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.