Results 61 - 71 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24733 | 5' | -50.4 | NC_005264.1 | + | 37966 | 0.66 | 0.993734 |
Target: 5'- uAGCCAGuuGCGCGG-CACGUg-GCGu -3' miRNA: 3'- uUCGGUUugUGCGCUaGUGCAagUGC- -5' |
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24733 | 5' | -50.4 | NC_005264.1 | + | 8908 | 0.66 | 0.993734 |
Target: 5'- -cGCUggAGACGCGCGucuUCAgGUacUCGCGg -3' miRNA: 3'- uuCGG--UUUGUGCGCu--AGUgCA--AGUGC- -5' |
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24733 | 5' | -50.4 | NC_005264.1 | + | 49759 | 0.66 | 0.994601 |
Target: 5'- gGAGUCAGACaccacuACGCGAggCAUGUccgucUCGCGu -3' miRNA: 3'- -UUCGGUUUG------UGCGCUa-GUGCA-----AGUGC- -5' |
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24733 | 5' | -50.4 | NC_005264.1 | + | 40960 | 0.66 | 0.994601 |
Target: 5'- cAGCCGcAGCGgGCGAcggCGCGagCGCGa -3' miRNA: 3'- uUCGGU-UUGUgCGCUa--GUGCaaGUGC- -5' |
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24733 | 5' | -50.4 | NC_005264.1 | + | 119211 | 0.66 | 0.993734 |
Target: 5'- cGAGCguAACGCGCGAcCACGcgaggUUugGc -3' miRNA: 3'- -UUCGguUUGUGCGCUaGUGCa----AGugC- -5' |
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24733 | 5' | -50.4 | NC_005264.1 | + | 153364 | 0.66 | 0.993734 |
Target: 5'- cGGCagacaAGACGCGCGAa-GCGUUgCGCGa -3' miRNA: 3'- uUCGg----UUUGUGCGCUagUGCAA-GUGC- -5' |
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24733 | 5' | -50.4 | NC_005264.1 | + | 114692 | 0.66 | 0.993734 |
Target: 5'- -cGCCGAGCaggauuGCGCGGUCuCGUgCGCc -3' miRNA: 3'- uuCGGUUUG------UGCGCUAGuGCAaGUGc -5' |
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24733 | 5' | -50.4 | NC_005264.1 | + | 88242 | 0.66 | 0.993734 |
Target: 5'- gGGGUCAGGCGCGgGGUCAuCGUagaucguaggCACGc -3' miRNA: 3'- -UUCGGUUUGUGCgCUAGU-GCAa---------GUGC- -5' |
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24733 | 5' | -50.4 | NC_005264.1 | + | 151847 | 0.66 | 0.99598 |
Target: 5'- gGGGCCGccgcuccggcggcGACACGUGGgggGCGUcuUCGCGg -3' miRNA: 3'- -UUCGGU-------------UUGUGCGCUag-UGCA--AGUGC- -5' |
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24733 | 5' | -50.4 | NC_005264.1 | + | 74095 | 0.66 | 0.993734 |
Target: 5'- uGGUCGuacAugGCGCGGUCgACGcugUCGCGg -3' miRNA: 3'- uUCGGU---UugUGCGCUAG-UGCa--AGUGC- -5' |
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24733 | 5' | -50.4 | NC_005264.1 | + | 77989 | 0.66 | 0.994601 |
Target: 5'- cGAGauaCGAAgGcCGCGAUCGCGggcgaUCACGu -3' miRNA: 3'- -UUCg--GUUUgU-GCGCUAGUGCa----AGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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